Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0273
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27060.1 68414.m03299 regulator of chromosome condensation (R...    32   0.35 
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    31   0.80 
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family...    28   4.3  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    28   5.7  
At3g60840.1 68416.m06806 microtubule associated protein (MAP65/A...    27   7.5  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    27   7.5  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    27   7.5  

>At1g27060.1 68414.m03299 regulator of chromosome condensation
           (RCC1) family protein low similiarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 386

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 198 LSAPGSKRSALSASDAECFRCAWAPGLCGGPDV 296
           +SA G   +A+SA D + F  +W  G CGGPDV
Sbjct: 211 ISANGDHSAAISA-DGQFF--SWGRGFCGGPDV 240


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -3

Query: 297 GHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETP-----RHR--NKPSRPVWSRRSPH 139
           GH  H R P P  +G+  R  P  ++AC   R   P      HR    PS PV +     
Sbjct: 20  GH--HRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTTNTG-- 75

Query: 138 HFHC 127
           H HC
Sbjct: 76  HRHC 79


>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
           protein 
          Length = 660

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
 Frame = -3

Query: 429 AKELELDHSRALSKSRLSS-WLGVXGVAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSG 253
           AK+ E   S  +  S L++ +     V   A    T+RA +S     Q        RH  
Sbjct: 252 AKKNEALRSLVVMNSLLANAYKSTCPVKSAATDTATVRAPRSSQHSTQQQQAVQTNRHMN 311

Query: 252 NTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 142
           +T  P+P+  +A     +  PR     + P+ S   P
Sbjct: 312 STAPPRPSVTAAEPMNSAAPPRPSVTAAEPMNSTAPP 348


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 446 DSRRCWPKSWSLTIAGHLASRD 381
           D +  WP  W ++ AGH+++ D
Sbjct: 54  DDKDSWPGQWDISSAGHISAGD 75


>At3g60840.1 68416.m06806 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 648

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 124 TTMEMVWTPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSAVPGR 270
           TT E + TP      +R +P T      PAAS  +    TP   AV  R
Sbjct: 586 TTKERILTPKTNEEKKRAVPTT------PAASVAMTEATTPFTPAVEKR 628


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 285 HHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFH 130
           ++R P+     N R PK    S      S++ RH + PS   W     HH H
Sbjct: 466 YNRSPSTHIGHNYRSPKFN--SGGHYPGSQSSRHHSGPSPSRWQPSHQHHHH 515


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -3

Query: 297 GHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFH 130
           GH+  + G  P++ G     +   +    + +  TP+ + +P  P  S +SP+  +
Sbjct: 146 GHRPQYGGQRPQYGGPGNNYQNQNVQQSNQSQYYTPQQQQQPQPPRSSNQSPNQMN 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,817
Number of Sequences: 28952
Number of extensions: 208006
Number of successful extensions: 670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)