Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0272
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   2.7  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   3.6  

>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 677 YHYSNITMEYVRSLIPRTSFAIGE 606
           + Y N+T  Y+ +L+P  S+ IGE
Sbjct: 262 FGYENLTDPYMNALLPTVSYVIGE 285


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 424 LSWFQDLDGPLIEYNDFIYIFCHRTDFM 341
           L+W +D++ P   +N  ++ +C  TD +
Sbjct: 639 LNWKKDIERPSFHHNQQLFNYCQLTDIL 666


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 74  IKMKFACHLSIHFICKTL 127
           I ++FA H+S+H +CK L
Sbjct: 273 IMIQFAAHVSLHTLCKAL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,418
Number of Sequences: 5004
Number of extensions: 44963
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)