Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0271
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      144   4e-35
07_01_0756 + 5819367-5820038,5820847-5821005                          140   1e-33
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     56   3e-08
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    47   2e-05

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  144 bits (350), Expect = 4e-35
 Identities = 68/82 (82%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
 Frame = +1

Query: 277 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 456
           L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140

Query: 457 AKLSVLPVRRGYWGNXI-ESHT 519
           AKLSV+PVRRGYWGN I + HT
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHT 162



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 32/49 (65%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           +PHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK   ++AG++D +
Sbjct: 159 QPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIEDVF 206



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/37 (59%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+K+
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/82 (80%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
 Frame = +1

Query: 277 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 456
           L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143

Query: 457 AKLSVLPVRRGYWGNXI-ESHT 519
           AKLSV+PVRRGYWGN I + HT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 33/49 (67%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK   ++AG++D +
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKV-LQFAGIEDVF 209



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/37 (62%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+K+
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +3

Query: 507 RKPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           RKPHTV CKV  K GSVTVR++  P  + +V+  VPKK   ++AG++D +
Sbjct: 46  RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKV-LKFAGIEDVF 94



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +1

Query: 364 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 459
           FV +GD + HI LGVKC+K  AT + GAIILA
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +1

Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 471
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A +  + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 472 LPV 480
           + V
Sbjct: 231 VTV 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,723
Number of Sequences: 37544
Number of extensions: 362223
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)