Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0271
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              169   2e-42
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.36 
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   3.3  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   3.3  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   3.3  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   3.3  
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)               29   4.4  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   5.8  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  28   5.8  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   5.8  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  169 bits (411), Expect = 2e-42
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 2/104 (1%)
 Frame = +1

Query: 214 QTREHLLVF-FTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 390
           +T EH+ +F    + FEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 391 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/49 (77%), Positives = 41/49 (83%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGS  VRLIP PR TGIVSAPVPKK   + AG++DCY
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKL-LQMAGIEDCY 171



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +2

Query: 164 WVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           WVPVTKLGRLV++ KI  LE IYLFSLPIK+
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKE 38


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 465 QLSKDNSASNGSGDFLAALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 286
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 285 RAEEEI 268
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 465 QLSKDNSASNGSGDFLAALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 286
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 285 RAEEEI 268
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 405
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 405
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 405
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 405
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 405
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 405
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
          Length = 963

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 467 DSLARIIAPRMAVATSLLHXTPKPI*PLLSPMATNALKRVRCPA 336
           D+L+  IAP    A SLL      + P+++P A +AL  ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 342 TAHTFQGICCHWRQQRSYW 398
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -2

Query: 438 NGSGDFLAALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 307
           N  G  LA      N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 340 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,353
Number of Sequences: 59808
Number of extensions: 411832
Number of successful extensions: 1252
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)