Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0271
         (658 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   169   4e-42
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   169   4e-42
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   169   4e-42
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   169   4e-42
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   169   4e-42

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  169 bits (410), Expect = 4e-42
 Identities = 85/106 (80%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 85.8 bits (203), Expect = 5e-17
 Identities = 38/49 (77%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGSV+VRLIP PR TGIVSAPVP+K     AG++DCY
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRKL-LTMAGIEDCY 206



 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  169 bits (410), Expect = 4e-42
 Identities = 85/106 (80%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGSV+VRLIP PR TGIVSAPVPKK     AG++DCY
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKL-LTMAGIEDCY 206



 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  169 bits (410), Expect = 4e-42
 Identities = 85/106 (80%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGSV+VRLIP PR TGIVSAPVPKK     AG++DCY
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKL-LTMAGIEDCY 206



 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  169 bits (410), Expect = 4e-42
 Identities = 85/106 (80%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGSV+VRLIP PR TGIVSAPVPKK     AG++DCY
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKL-LTMAGIEDCY 206



 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  169 bits (410), Expect = 4e-42
 Identities = 85/106 (80%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 205 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 384
           K +   E  L     + FEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 385 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
           NGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 162



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +3

Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           KPHTVPCKVTGKCGSV+VRLIP PR TGIVSAPVPKK     AG++DCY
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKL-LTMAGIEDCY 206



 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +2

Query: 146 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKE 73


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,367,385
Number of Sequences: 53049
Number of extensions: 593926
Number of successful extensions: 1650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)