Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0271
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   138   2e-33
U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerat...    29   2.9  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    28   5.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  138 bits (335), Expect = 2e-33
 Identities = 68/86 (79%), Positives = 75/86 (87%)
 Frame = +1

Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
           + FEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI 507
           TAIRGAI+ AKL+V+PVRRGYWGN I
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKI 170



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 37/48 (77%), Positives = 39/48 (81%)
 Frame = +3

Query: 513 PHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
           PHTVPCKVTGKC SV VRLIP PR TGIVSAPVPKK     AG++DCY
Sbjct: 173 PHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKL-LHMAGIEDCY 219



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +2

Query: 149 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK+
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKE 87


>U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerate
           kinase protein 1 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 132 VVGAARKTRKSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKIRD 263
           +VG     R SGFL  N    F+K     +R F   L  +K+ D
Sbjct: 175 MVGVEHSQRASGFLLKNELSYFSKALDNPARPFLAILGGAKVAD 218


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 369 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 283
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 369 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 283
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +2

Query: 152 DQKEWVPVTKLGRLVREGKIDKLESI----YLFSLPIKDSRSLISSSARP*MMRFLRSCL 319
           DQ +   ++K    +     D L+SI    YL +  IKD +  I+ S+ P ++  + +  
Sbjct: 574 DQLDLPSISKKQLKIATFGSDNLQSIKSKGYLVNFLIKDKKIPIALSSVPSIVNSITTAK 633

Query: 320 YRNKHVPDSAHVSRHLLPLATT 385
              + V D  H    +LP  TT
Sbjct: 634 INEETVQDLIHNDNAILPRTTT 655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,705
Number of Sequences: 27780
Number of extensions: 289328
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)