Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0271
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 157 6e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 157 8e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 1e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 1e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 1e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 1e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 30 1.6
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 2.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.8
At3g01450.1 68416.m00069 expressed protein 28 6.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.3
At3g63100.1 68416.m07087 glycine-rich protein 27 8.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 157 bits (381), Expect = 6e-39
Identities = 71/91 (78%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
TAIRGAIILAKLSV+P+RRGYWGN I + HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK ++AG+ D +
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIDDVF 208
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/35 (68%), Positives = 32/35 (91%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 157 bits (380), Expect = 8e-39
Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK ++AG+ D +
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIDDVF 217
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++++WVPVTKLGRLV G I ++E IYL SLP+K+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 156 bits (378), Expect = 1e-38
Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK ++AG+ D +
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIDDVF 216
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 156 bits (378), Expect = 1e-38
Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK ++AG+ D +
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIDDVF 216
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 156 bits (378), Expect = 1e-38
Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK ++AG+ D +
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIDDVF 216
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 156 bits (378), Expect = 1e-38
Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
Frame = +1
Query: 250 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 429
+ ++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 430 TAIRGAIILAKLSVLPVRRGYWGNXI-ESHT 519
TAIRGAIILAKLSV+PVRRGYWGN I + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/49 (67%), Positives = 41/49 (83%)
Frame = +3
Query: 510 KPHTVPCKVTGKCGSVTVRLIPXPRXTGIVSAPVPKKASFRWAGVQDCY 656
KPHTVPCKVTGKCGSVTVR++P PR +GIV+A VPKK ++AG+ D +
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKV-LQFAGIDDVF 216
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 152 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 295 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 474
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 475 PV 480
V
Sbjct: 209 QV 210
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -3
Query: 512 LSXLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHXTPKPI*PLLSPMATNALKRVRCPAR 333
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 332 VCFCTGMILRTSSFR 288
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 544 LPVTLQGTVCGFLXCYPSNLF 482
LP+ LQG + GF+ PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 361 AFVAIGDNNGHIGLGVKCSKE 423
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 512 LSXLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHXTPKPI*PLLSPMATNALKRVRCPAR 333
L LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 332 VCF 324
CF
Sbjct: 222 TCF 224
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 516 HTVPCKVTGKCGSVTVRL 569
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -3
Query: 143 RAHDHGRXXDRVHEDRHGLYLHRVIRIRRENRHVH 39
R H HGR DR H HG + HR R R H H
Sbjct: 111 RDHRHGR--DRGHHRGHGHHHHRGHRRGRGRGHGH 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,722
Number of Sequences: 28952
Number of extensions: 275627
Number of successful extensions: 732
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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