Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0270
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.006
03_02_0484 + 8805053-8805538 38 0.006
03_02_0483 - 8804021-8804485 38 0.006
03_02_0478 + 8775892-8776377 37 0.020
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.045
01_01_0229 - 1943473-1943922 35 0.060
02_05_0494 + 29486960-29487454 35 0.079
01_01_0231 + 1951047-1951499 35 0.079
11_02_0041 - 7669692-7670312 33 0.32
01_01_0227 + 1933247-1933699 32 0.42
02_02_0077 - 6586638-6587165 32 0.56
12_01_0061 + 514798-515967 31 0.97
12_02_0665 + 21670956-21671834,21672563-21672583 30 2.2
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 29 3.0
06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151... 29 3.9
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 28 6.9
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 28 9.1
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYP 516
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYP 516
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYP 516
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S +F+RR+ LP+ A PE +++ + +GVLT+T P+
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPK 146
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>02_05_0494 + 29486960-29487454
Length = 164
Score = 34.7 bits (76), Expect = 0.079
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 406 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRR 510
R V ++ LPE AA + +R++ DGVLT+T P+R
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.079
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 409 QFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
+F RR+ +P GA V +RL DGVLT+T P+
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPK 172
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 403 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 507
S +F RR+ LP GA + V + + +GVLT+T P+
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>02_02_0077 - 6586638-6587165
Length = 175
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 409 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRRYPTPSRESER 540
+F+RR+ LPE A + V + DGVLT+T ++ P P + R
Sbjct: 117 KFMRRFPLPESADLDGVRAEY-KDGVLTVTVDKK-PPPEPKKPR 158
>12_01_0061 + 514798-515967
Length = 389
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 604 SWVPSLWSLISLRTGPVCAMGTFRSPLTAS 515
SW PS +LISL +G CA FRS + A+
Sbjct: 295 SWSPSKLNLISLGSGRFCAAKIFRSNMPAA 324
>12_02_0665 + 21670956-21671834,21672563-21672583
Length = 299
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 412 FVRRYALPEGAAPETVESRLSSDGVL--TITAPRRYPTPSRESERCPSHRPV 561
F+RR LP A+P SR+SS L + PR +P ++ PSH PV
Sbjct: 24 FLRRGILPSPASPLPFASRVSSAAPLRHRLPPPRFSLSPIPKTLSSPSHVPV 75
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -3
Query: 338 VFTEISSGEKCCTSRLTWNLSLSA-FMLERGHEM 240
+F ++S GE+C ++ T+N+ +SA FM +R +M
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDM 434
>06_01_0195 +
1512978-1513207,1513938-1513945,1514040-1514197,
1514990-1515097
Length = 167
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 325 SLPARSAARPD*LGTCPCRPLCWNEVT 245
+LP S A P + P RP CW EVT
Sbjct: 44 ALPTSSGAAPS-ANSQPSRPACWEEVT 69
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 134 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 250
D+ FGLAL DM A AC F+ R L RD
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -1
Query: 460 PQSQAPRLQAARNVGRTA-LKYTRARLSSLRACLPP--RCTHRQSSPKSLPARSAARPD* 290
P+ Q P + R ++ RA + + C+ P R L A +A+
Sbjct: 598 PRKQMPEFETTRYFNLAGFVEQLRALAAEVGYCITPEYRVVRNFEDKGVLEALWSAKSSP 657
Query: 289 LGTCPCRPL 263
GTCP RPL
Sbjct: 658 YGTCPSRPL 666
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,865,967
Number of Sequences: 37544
Number of extensions: 462809
Number of successful extensions: 1613
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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