Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0269
         (396 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.63 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   2.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   3.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 237 GHAVGDIPGVRFKVVKVANVSLLALYKEK-KERXRSXVYIVISDLLSGS 94
           G AVGD+PG+R +V+   N+       E  ++   + VY+ ++    GS
Sbjct: 62  GTAVGDVPGLR-QVLANGNLVFPPFRAEDYRQEVHAQVYVCLAKNSVGS 109


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
          beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 15 VFFFFFCCTQYLLCTRILHFMNL*TTR 95
          +FFF FCC  + +        NL T++
Sbjct: 10 LFFFSFCCILFFIYLYWQQTSNLTTSK 36


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 123 CTPMIXVAPFSLCRERGET 179
           C P + V P   C E G T
Sbjct: 163 CDPAVCVLPDCFCSEDGTT 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,063
Number of Sequences: 336
Number of extensions: 1369
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)