Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0269
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    84   7e-18
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    84   7e-18
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    41   8e-05
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   2.4  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   5.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   7.4  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    24   9.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 38/43 (88%), Positives = 40/43 (93%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN  +ENDEVL+
Sbjct: 60  KQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLL 102



 Score = 64.1 bits (149), Expect = 8e-12
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
           +GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+ R+
Sbjct: 103 SGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 38/43 (88%), Positives = 40/43 (93%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN  +ENDEVL+
Sbjct: 60  KQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLL 102



 Score = 64.1 bits (149), Expect = 8e-12
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
           +GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+ R+
Sbjct: 103 SGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 40.7 bits (91), Expect = 8e-05
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = -2

Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTF 216
           K K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+R    +  P V +
Sbjct: 62  KPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRGGRAQDCPGVQY 116


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 350 RVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVK 237
           R +LI+ GK VT F    G     + +DE  +R++V+K
Sbjct: 124 RQELIRTGK-VTPFRNLSGLQKEVDFDDESSIREAVIK 160


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 102 TAGHLSQCTPMIXVAPFSLCRERGETRWLL 191
           TA  L+QC  +I +  F++ RE     WLL
Sbjct: 212 TAVFLAQCVKVISIGLFNIRREMMIIIWLL 241


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 335 KNGKKVTAFVPRDGCLNHXEENDEV--LVRDSVVKV 234
           K+G     FVP  G   + EEND +  ++  SVV++
Sbjct: 375 KDGNNEWMFVPTHGVAYNYEENDPMNPILNGSVVRL 410


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 43  NIYYVLGFYIL*TYKQRASRQQVTYHNV 126
           N ++ LGF  L  +  R S ++V+Y N+
Sbjct: 226 NFFFTLGFMALGVFFFRRSLKKVSYFNL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,116
Number of Sequences: 5004
Number of extensions: 22563
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)