Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0269
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 82 2e-16
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 82 2e-16
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 69 1e-12
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 42 1e-04
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 29 1.8
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 28 2.4
08_01_0429 + 3767486-3768022,3768247-3768523,3769132-3769364,377... 27 4.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 27 4.1
04_03_1015 - 21734381-21736534 26 9.6
02_03_0165 + 15870306-15870583,15870688-15870838,15871914-158721... 26 9.6
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN EENDEVL+
Sbjct: 59 KQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLI 101
Score = 77.8 bits (183), Expect = 3e-15
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+ RS
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN EENDEVL+
Sbjct: 59 KQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLI 101
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN EENDEVL+
Sbjct: 229 KQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLI 271
Score = 77.8 bits (183), Expect = 3e-15
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+ RS
Sbjct: 272 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 74.5 bits (175), Expect = 3e-14
Identities = 34/38 (89%), Positives = 37/38 (97%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKER 142
AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 139
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 69.3 bits (162), Expect = 1e-12
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAI KC RVQL+KNGKK+ AFVP DGCLN +EN+ V
Sbjct: 130 KQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYV 172
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVK 190
+GFG KGHAVGDI GVRF+VVK
Sbjct: 72 SGFGHKGHAVGDIRGVRFEVVK 93
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 296 GCLNHXEENDEVLVRDSVVKVTPSVTFP 213
GCL H + DE+L+R V+ +P++ P
Sbjct: 513 GCLTHAQNADEILLRRGVLLSSPTLLPP 540
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 27 FFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCTPMIXVAPFSLCR 164
+FCC QY + I HF TR + ++ + T + + S R
Sbjct: 43 YFCCKQYDIILLIAHFYRALRTRMKSVRNIQKITKAMKMVAASKLR 88
>08_01_0429 +
3767486-3768022,3768247-3768523,3769132-3769364,
3773221-3773625,3773717-3773755
Length = 496
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -2
Query: 362 RKCVRVQLIKNGKKV----TAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTFPE 210
R CV + K+G+ + T R G H + ++E +R VV+VTPS PE
Sbjct: 119 RGCVVLLHDKSGRYLRGNQTFLARRPGVSVHSDVDNETSLRWEVVRVTPSQVRPE 173
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 320 VTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTFPE 210
+ F P G L + +D+V++ SV V+P V F E
Sbjct: 78 LAVFAPLAGKLAYRPSHDDVVIDCSVAAVSPGVVFIE 114
>04_03_1015 - 21734381-21736534
Length = 717
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 374 NSAIRKCVRVQLIKNGKKVTAFVPRDG 294
+SA+ C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
>02_03_0165 +
15870306-15870583,15870688-15870838,15871914-15872174,
15872849-15872930,15873584-15873777,15874267-15874581
Length = 426
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 362 RKCVRVQLIKNGKKVTAFVPRDGC---LNHXEEN 270
RK VRVQL+++G + RD C + H E+N
Sbjct: 241 RKFVRVQLLRSGWCIRKIPGRDACRITVLHHEDN 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,128,289
Number of Sequences: 37544
Number of extensions: 158181
Number of successful extensions: 352
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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