Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0269
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               87   5e-18
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               87   5e-18
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         34   0.036
SB_21760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_660| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   9.6  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 87.0 bits (206), Expect = 5e-18
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+ EENDEVL+
Sbjct: 59  KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLI 101



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGV 208
           +GFGR+GHAVGDIPG+
Sbjct: 102 SGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 87.0 bits (206), Expect = 5e-18
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+ EENDEVL+
Sbjct: 60  KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLI 102



 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
           +GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKER RS
Sbjct: 103 SGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -2

Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVP 303
           K K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 240 KPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_21760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 338 IKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTFPE 210
           IK+G         DGC+N   +  E+ V ++   +  S TFPE
Sbjct: 5   IKSGPSARYLRDPDGCINVLWKKAELGVIENAKPIESSSTFPE 47


>SB_660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -1

Query: 198 VVKVANVSLLALYKEKKERXRSXVYIV----ISDLLSGSALF 85
           ++ +AN + +A++     R R  +Y++    +SDLL G +LF
Sbjct: 14  LIIIANTTAIAVFHSDGFRFRKSIYLLLSLTVSDLLVGLSLF 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,705,382
Number of Sequences: 59808
Number of extensions: 187255
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)