Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0269
(396 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 86 3e-17
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 86 3e-17
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 86 3e-17
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 80 3e-15
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 38 0.012
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 38 0.012
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 38 0.012
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 38 0.012
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 38 0.012
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 38 0.012
BC007291-1|AAH07291.1| 767|Homo sapiens SHROOM3 protein protein. 28 9.7
AB055660-1|BAB84689.1| 1995|Homo sapiens Shroom-related protein ... 28 9.7
AB040914-1|BAA96005.1| 1380|Homo sapiens KIAA1481 protein protein. 28 9.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN EENDEVLV
Sbjct: 60 KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKER RS
Sbjct: 103 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN EENDEVLV
Sbjct: 60 KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKER RS
Sbjct: 103 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -2
Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN EENDEVLV
Sbjct: 60 KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKER RS
Sbjct: 103 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 79.8 bits (188), Expect = 3e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -1
Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXR 136
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKER R
Sbjct: 20 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
Score = 38.3 bits (85), Expect = 0.009
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -2
Query: 311 FVPRDGCLNHXEENDEVLV 255
FVP DGCLN EENDEVLV
Sbjct: 1 FVPNDGCLNFIEENDEVLV 19
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
K K+PNSA RKC RV+L G++ F+P +G + +E+ VLV + P V
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEGGRTQDLPGV 121
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
K K+PNSA RKC RV+L G++ F+P +G + +E+ VLV + P V
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEGGRTQDLPGV 121
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
K K+PNSA RKC RV+L G++ F+P +G + +E+ VLV + P V
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEGGRTQDLPGV 121
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
K K+PNSA RKC RV+L G++ F+P +G + +E+ VLV + P V
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEGGRTQDLPGV 121
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
K K+PNSA RKC RV+L G++ F+P +G + +E+ VLV + P V
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEGGRTQDLPGV 121
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = -2
Query: 389 KLKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
K K+PNSA RKC RV+L G++ F+P +G + +E+ VLV + P V
Sbjct: 69 KPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEGGRTQDLPGV 121
>BC007291-1|AAH07291.1| 767|Homo sapiens SHROOM3 protein protein.
Length = 767
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 323 KVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTF 216
+++ V RD H + DEV VRD K T S TF
Sbjct: 259 RISESVLRDSPPPHEDYEDEVFVRDPHPKATSSPTF 294
>AB055660-1|BAB84689.1| 1995|Homo sapiens Shroom-related protein
protein.
Length = 1995
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 323 KVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTF 216
+++ V RD H + DEV VRD K T S TF
Sbjct: 1487 RISESVLRDSPPPHEDYEDEVFVRDPHPKATSSPTF 1522
>AB040914-1|BAA96005.1| 1380|Homo sapiens KIAA1481 protein protein.
Length = 1380
Score = 28.3 bits (60), Expect = 9.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 323 KVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSVTF 216
+++ V RD H + DEV VRD K T S TF
Sbjct: 872 RISESVLRDSPPPHEDYEDEVFVRDPHPKATSSPTF 907
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,561,923
Number of Sequences: 237096
Number of extensions: 834684
Number of successful extensions: 1277
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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