Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0269
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    86   8e-18
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    34   0.032
Z78410-2|CAB01636.2|  327|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    27   4.9  
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 86.2 bits (204), Expect = 8e-18
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN  EENDEVLV
Sbjct: 60  KQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLV 102



 Score = 73.7 bits (173), Expect = 4e-14
 Identities = 33/41 (80%), Positives = 37/41 (90%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
           +GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKER RS
Sbjct: 103 SGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVR 252
           K+PNS  RKC  V+L   G +V A++P  G  ++ +E+ +VLV+
Sbjct: 89  KKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVK 129


>Z78410-2|CAB01636.2|  327|Caenorhabditis elegans Hypothetical
           protein C51E3.2 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 18  FFFFFCCTQYLLCTRILHFMNL*TTRFPTAGHLSQCTPMI 137
           FFFFFC    ++   I+    + T RF +  HL  C   I
Sbjct: 14  FFFFFCSVIGVIGNVIMVICTIRTKRFRSPCHLLICATCI 53


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
            protein 4 protein.
          Length = 1392

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 391  RSLSSPTLPSANASVYSSLRTERK*PHSSPVTV 293
            + +S PT+PS++  V S +R   +  H+ P  V
Sbjct: 1335 KPVSCPTIPSSSLEVSSKIRVYAQCAHAEPAAV 1367


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical protein
            C01B9.1b protein.
          Length = 1671

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 24   FFFCCTQYLLCTRILHFMNL*TTRFPTAGH 113
            F FC + +L   ++ HFMN  TT F  A H
Sbjct: 1198 FQFCLSTFLTKVKLQHFMNF-TTEFIFAIH 1226


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical protein
            C01B9.1a protein.
          Length = 1601

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 24   FFFCCTQYLLCTRILHFMNL*TTRFPTAGH 113
            F FC + +L   ++ HFMN  TT F  A H
Sbjct: 1128 FQFCLSTFLTKVKLQHFMNF-TTEFIFAIH 1156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,768,809
Number of Sequences: 27780
Number of extensions: 132737
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)