Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0269
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...    83   5e-17
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...    83   5e-17
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    36   0.007
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   1.5  
At3g31310.1 68416.m03983 hypothetical protein                          28   2.6  
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    26   7.9  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score = 83.4 bits (197), Expect = 5e-17
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+ EENDEVL+
Sbjct: 59  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 101



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
           AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+ RS
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score = 83.4 bits (197), Expect = 5e-17
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLV 255
           KQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+ EENDEVL+
Sbjct: 59  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI 101



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = -1

Query: 255 AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERXRS 133
           AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+ RS
Sbjct: 102 AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -2

Query: 383 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDSVVKVTPSV 222
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+R   VK +P V
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 198 VVKVANVSLLALYKEKKERXRSXVYIVISDLLSGSALF 85
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIF 117


>At3g31310.1 68416.m03983 hypothetical protein
          Length = 291

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 374 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHXEENDEVLVRDS-VVKVT 231
           + AI K    +L+K   K  A V +D  +   + N  + +RDS V +VT
Sbjct: 239 DEAISKAAEAKLVKEKTKEKAIVNKDNSVKLAQNNRAIGLRDSEVARVT 287


>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 258 SAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKE 145
           S+GFG     VG   G+R+  + + N + +A  K ++E
Sbjct: 86  SSGFGYGSSEVGPSLGMRYMSLSIRNATTVAAKKPEEE 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,283,407
Number of Sequences: 28952
Number of extensions: 122771
Number of successful extensions: 260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)