Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0267
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40361| Best HMM Match : ResIII (HMM E-Value=0.42)                   30   2.5  
SB_55648| Best HMM Match : NCD3G (HMM E-Value=5.3)                     30   2.5  

>SB_40361| Best HMM Match : ResIII (HMM E-Value=0.42)
          Length = 1127

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +2

Query: 278 CRPKGGR*ETQKKRGLGRRDVNLFRRTLRHQVSSRYSGFSVDEKMGALKINLFSKW 445
           CRP G   E Q+ RG+ RR   LF   L    +           MG      F KW
Sbjct: 183 CRPCGANREGQRMRGVERRARKLFAPVLSDIAADVQEYIEATHSMGGAIGYRFKKW 238


>SB_55648| Best HMM Match : NCD3G (HMM E-Value=5.3)
          Length = 446

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = +2

Query: 278 CRPKGGR*ETQKKRGLGRRDVNLFRRTLRHQVSSRYSGFSVDEKMGALKINLFSKW 445
           CRP G   E Q+ RG+ RR   LF   L    +           MG      F KW
Sbjct: 183 CRPCGANREGQRMRGVERRARKLFAPVLSDIAADVQEYIEATHSMGGAIGYRFKKW 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,724,266
Number of Sequences: 59808
Number of extensions: 370887
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)