Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0267
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67735-1|CAN86576.1|  404|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z67735-1|CAN86576.1|  404|Caenorhabditis elegans Hypothetical
           protein C15A7.4 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = +2

Query: 41  HCFNRLILYSCFSMNYSDIDLFFLKFHGARLLIN*PNSLK---QIVTLQHCQ-----NLH 196
           +C+  ++ Y  +   YS++DL  L+F  AR LI+    +K   Q +    CQ       +
Sbjct: 127 NCWMPIVKYRSYDRRYSELDL--LEFSDARTLISYKGEIKTALQTMVTTKCQFSFGEYPN 184

Query: 197 E*KRQTVTVVPFRTAFPKVAITPPCGRCRPK 289
           + +  ++ ++P + A  +     P G C PK
Sbjct: 185 DYQNCSIMLIPNQNA-DEFRFVSPNGYCNPK 214


>U40060-7|AAA81145.2|  391|Caenorhabditis elegans Hypothetical
           protein F38B6.7 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 360 RVLLNKFTSRLPSPLFFWVSYRPPLGLQRPQGGV 259
           +V +NK +S L  P+F+     P +    P+GG+
Sbjct: 184 KVGINKMSSNLSMPIFYVTQLSPSIVPNAPKGGI 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,858,965
Number of Sequences: 27780
Number of extensions: 301436
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)