Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0267
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72410.1 68414.m08374 COP1-interacting protein-related simila...    30   2.0  
At5g25350.1 68418.m03007 F-box family protein contains Pfam PF00...    29   4.7  

>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
           to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
           thaliana] GI:3327870
          Length = 1163

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 721 YVIFKIKPKHGKCEYY 768
           YV+F++ PKH KCE +
Sbjct: 9   YVVFELSPKHSKCELF 24


>At5g25350.1 68418.m03007 F-box family protein contains Pfam
           PF00646: F-box domain and Pfam PF00560: Leucine Rich
           Repeat (6 copies); similar to  F-box protein FBL6
           (GI:4432860) [Homo sapiens]
          Length = 623

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 68  SCFSMNYSDIDLFFLKFHGARLLIN*PNSLK-QIVTLQHCQNL 193
           +C+S+N  DI    +  HG + L + PN L  Q++++  C ++
Sbjct: 536 NCYSVNDLDISNTLVSDHGIKALASSPNHLNLQVLSIGGCSSI 578


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,453
Number of Sequences: 28952
Number of extensions: 269917
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)