Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0266
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    30   0.50 
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    27   4.6  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   6.1  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   8.1  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 559 SAERDSHRSEGEYXXERYV-DRKXYDGKWADGNETRK 666
           S ER+ +  +     ERY  +RK YD K A+G +T K
Sbjct: 59  STEREPYEEKARQDKERYERERKEYDTKLANGEKTGK 95


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 813 LYKSKKWLNLHSAPQSKSTSEYLXLTFGAKNN 718
           +YKS   LN +S P+S S S  +    GAK +
Sbjct: 174 VYKSHLLLNAYSPPKSASASSVIVWVCGAKKS 205


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +1

Query: 526 RDKDRDSYSRFSAERDSHRSEGEYXXER----YVDRKXYDGKWADGNETRKXHPTRRKGP 693
           R   RD Y     ERD    +  +  ER    Y D + Y  +   GN+    H  R K P
Sbjct: 358 RSNYRDDYRHRRKERDHRDDQSSFRNERFSNYYGDDRSYHKRRNTGNKNCDDH-LRDKSP 416

Query: 694 QKNLK 708
           ++  +
Sbjct: 417 ERRYR 421


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 154 VVRDQDLGPGRGTTVELVVGVIGVAGEALKEART 255
           + R QD   G GTT      V+  AGE L+EART
Sbjct: 86  IARAQDAEVGDGTT-----SVVVFAGELLREART 114


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 826 IKKLALQIQKMAKSTFSTPIQV 761
           +++L  +I+K+   TFSTPI+V
Sbjct: 224 LQQLVQEIKKLNNQTFSTPIRV 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,060
Number of Sequences: 5004
Number of extensions: 39247
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)