Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0266
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939...    33   0.23 
05_02_0049 - 6083364-6084111,6084140-6084246                           32   0.69 
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183...    29   6.5  

>11_06_0490 -
           24293218-24293373,24293454-24293521,24293845-24293986,
           24294079-24294699,24294791-24294871,24295002-24295072,
           24296106-24296176,24296568-24296675,24296786-24297024,
           24297493-24297657
          Length = 573

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 526 RDKDRDSYSRFSAERDSHRSEGEYXXERYVDRKXYDGKWADGNETRKXHPTRRK 687
           RD+DRD   R   ++D  R       +R   R+ +D + +D  + R+ H + R+
Sbjct: 83  RDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRERSDDRDRRRGHDSERR 136


>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -2

Query: 792 LNLHSAPQSKSTSEYLXLTFGAKNNRITL*ILLGAFSSCWVXLSGFVSIGPFSVVXFPID 613
           LNL S+P S S ++ + LT  AKN    +  L   FS      +  V +G  +   F  D
Sbjct: 98  LNLSSSPTSPSLTDSIQLTVTAKNPNKKVVYLYDDFSFSASTAANAVPLGAATSPGFTHD 157

Query: 612 VSFXXIFTLTAMA 574
                +FT T  A
Sbjct: 158 AGNTTVFTATIAA 170


>12_02_1280 -
           27517683-27517871,27517955-27518029,27518155-27518318,
           27518424-27518538,27518783-27519074,27519162-27519318,
           27519438-27519510,27520309-27520377,27520471-27520694,
           27520800-27520981,27521067-27522064,27522335-27522580
          Length = 927

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 526 RDKDRDSYSRFSAERDSHRSEGEYXXERYVDRKXYDGKWADGNETRKXHPTRRKGPQKNL 705
           RD+ R+S  R S+ R       +   +RY +    D     G+E  K    R +G  K+L
Sbjct: 300 RDESRESERRSSSSRHKDNERRDRSKDRYKESDKVD----SGHERDKTRDDRDRGRHKDL 355

Query: 706 KS 711
           +S
Sbjct: 356 ES 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,055,787
Number of Sequences: 37544
Number of extensions: 279918
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)