Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0266
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11126-3|CAA77474.2|  487|Caenorhabditis elegans Hypothetical pr...    31   1.4  

>Z11126-3|CAA77474.2|  487|Caenorhabditis elegans Hypothetical
           protein ZK643.5 protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 508 TYSPERRDKDRDSYSRFSAERDSHRSEGEYXXERYVDRKXY--DGKWADGNETRKXHPTR 681
           +YS      D  S SR S+  D  R +         DRK Y  DG+     + RK H  R
Sbjct: 255 SYSSTSSSSDGRSRSRSSSRSDRRRRDDRKRPREDRDRKDYRRDGRRDGRRDDRKRHDDR 314

Query: 682 RK 687
           R+
Sbjct: 315 RR 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,017,942
Number of Sequences: 27780
Number of extensions: 235604
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)