Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0266
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    29   3.1  
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si...    29   4.1  
At2g29020.1 68415.m03529 Rab5-interacting family protein similar...    28   7.1  

>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 523 RRDKDRDSYSRFSAERDSHRSEGEYXXERYVDRKXYDGKWA 645
           RR++ RD  SR   + D HRS  +Y  ER  +R    G+ A
Sbjct: 460 RREESRDKESRRERDEDDHRSHRDY-KERRRERDDRHGREA 499


>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00575: S1 RNA binding domain
          Length = 1168

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 526 RDKDRDSYSRFSAERDSHRSEG-EYXXERYVDRKXYDGKWADGNETRKXHPTRR 684
           RD++RD   R    RD  R+ G E   +R  DR+  +    DG E       RR
Sbjct: 142 RDRNRDRDDRRDRHRDRERNRGDEEGEDRRSDRRHRERGRGDGGEGEDRRRDRR 195


>At2g29020.1 68415.m03529 Rab5-interacting family protein similar to
           Protein C20orf24 (Rab5-interacting protein) (RIP5)
           (PNAS-11) (Swiss-Prot:Q9BUV8) [Homo sapiens]; contains
           transmembrane domains
          Length = 133

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 737 HLVQRIIGLLFRFFWGPFLLVGCXFLVSF 651
           H +++++GLL    WG   LVG  +L+ F
Sbjct: 51  HWIRQVVGLLCGLLWGAIPLVGGIWLLLF 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,699
Number of Sequences: 28952
Number of extensions: 216640
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)