Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0265
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    28   1.4  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   1.8  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   4.2  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   7.4  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -3

Query: 272 IRSAESQELDERCNSCDQLLIDHTQLLLIIAF-LVTEFLLNVGVDRFGQISAFL-RWQQF 99
           +RS   Q +    N C+ LL     +L  + F +V   LLN+ +  F         W + 
Sbjct: 215 LRSCNRQSMRLLLNECEPLL--KKDILSNLPFSIVQSILLNLDIHSFLSCRLVSPTWNRI 272

Query: 98  LDIAVQYLGHF*NLLG 51
           LD+   Y  H  +L G
Sbjct: 273 LDVHTSYWKHMFSLFG 288


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 60  ILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQK 161
           I+E+T +++S+  KL   +ESRD    + S++++
Sbjct: 31  IVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
 Frame = +3

Query: 36  TTLVVPEKILEVTQIL-YSNIQKLLPTQESRDLAEAI-HSYVQKKLR--NQKCDDEKELR 203
           T+L+  +  L  T+IL Y+++   L   ESR L EA+  + V   +R  +Q     K+L 
Sbjct: 319 TSLLPKQDPLISTEILVYNDLSHSLSNAESRKLCEAVGENVVVTSIREHSQLQTWVKKLP 378

Query: 204 VVYQKLITAVTSLVQFLGLS*TNLALSTRRPTLRTSSLPQAQLSPLRLLL 353
            + Q  I A   L Q L +   ++   T RP    S      L  LRLLL
Sbjct: 379 QLRQLPIVA-EELNQKLQIGINSIVFMTNRPKYLVSG--TTPLGKLRLLL 425


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 492 TVNTSSVRRSPPHLPRKLSLRIGRTTTSIRNFTL 593
           T+N++  R +   L + LS+  G+T TS+ NF +
Sbjct: 14  TINSAVARSNSVLLAKNLSIPWGKTLTSVLNFDI 47


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 32/129 (24%), Positives = 59/129 (45%)
 Frame = +3

Query: 219  LITAVTSLVQFLGLS*TNLALSTRRPTLRTSSLPQAQLSPLRLLLERQRGASSNSCTPVI 398
            L ++V++   ++  S ++  LST   T  +SS     +S +       +  SS S +   
Sbjct: 932  LTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTS 991

Query: 399  SLTSWPFSEPTDLVASTH*MKCRLSSALLL*TVNTSSVRRSPPHLPRKLSLRIGRTTTSI 578
             LTS   + P+   + ++      SSA    + +TS V+ +P  +   +SL   + TTS 
Sbjct: 992  GLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNP--VKTVVSLESYKFTTS- 1048

Query: 579  RNFTLANPT 605
            +   + NPT
Sbjct: 1049 KISLVKNPT 1057


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 407 ILALLRAYRPRSINPLDEVPSKLRAVVV 490
           I  +L +Y P+ INP +E+P   R + +
Sbjct: 9   IYKVLYSYEPQEINPGEEIPENEREISI 36


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 127 SLLSCVGNSFWILLYSIWVTSRIFSGTTRV 38
           S L+CV   +W L  +IW + ++ SG+ RV
Sbjct: 55  SNLTCVNIGYWQLFLNIWKSDKL-SGSFRV 83


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 540 KLSLRIGRTTTSIRNFTLANPTFKTESPRA 629
           KLS+ +GR    + NF L +P    E P A
Sbjct: 151 KLSIYVGRRLCELHNFILLHPHEVLEMPAA 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,267
Number of Sequences: 5004
Number of extensions: 62961
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)