Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0265
(820 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5) 31 1.1
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 30 2.0
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35) 30 2.0
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3) 30 2.6
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 29 6.0
SB_24793| Best HMM Match : 7tm_1 (HMM E-Value=0.00083) 29 6.0
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 28 7.9
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
Length = 561
Score = 31.1 bits (67), Expect = 1.1
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +3
Query: 270 NLALSTRRPT----LRTSSLPQAQLSPLRLLLERQRGASS-NSCTPVISLTSWPFSEPTD 434
N ++S+RR T LRT+S P + P R + + R + T +SL +
Sbjct: 112 NKSISSRRDTGGRVLRTTSRPLSAPMPRRSISDLARDLPTPRQATRSVSLPDLTMATSRA 171
Query: 435 LVASTH*MKCRLSSALLL*TVNTSSVRRSPPHLPRKLSLRIGRTTTSIRNFTLANPTFKT 614
L++ K SS LLL T + + + P + +TT S + + +PT K+
Sbjct: 172 LISDGEQAK---SSKLLLDTPKRNEAKAAEPQSNINKEIGKAKTTKSRQPASAISPTPKS 228
Query: 615 ESPR 626
E R
Sbjct: 229 EKDR 232
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 76 RYCTAISRNCCQRRKAEI-WPKRSTPTFRR-NSVTRNAMMRRSCV 204
RY T + +N RR + WP S P FRR NS+ +N R C+
Sbjct: 719 RYFTNLKKNLPSRRPLDTYWPSAS-PLFRRTNSILKNMYHRWRCM 762
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 30.3 bits (65), Expect = 2.0
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = +3
Query: 270 NLALSTRRPT----LRTSSLPQAQLSPLRLLLERQRGASSNS-CTPVISLTSWPFSEPTD 434
N ++S+RR T LRT+S P + P R + + R + T +SL +
Sbjct: 514 NKSVSSRRDTGGCVLRTTSRPLSAPMPRRSISDLARELPTRGQATRSVSLPDLTMATSRA 573
Query: 435 LVASTH*MKCRLSSALLL*TVNTSSVRRSPPHLPRKLSLRIGRTTTSIRNFTLANPTFKT 614
L++ K SS LLL T + V + P + +TT S + + +PT K+
Sbjct: 574 LISDGEQAK---SSKLLLDTPKRNQVDAAEPQSNINKEIGKAKTTKSRQPASAISPTPKS 630
Query: 615 ESPR 626
E R
Sbjct: 631 EKDR 634
>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
Length = 432
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 132 AEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSLVQFLGLS*TNLALSTRRP 296
A +HS R+Q+C + +E+R+ LI LV FL ++ LA S P
Sbjct: 275 AVGVHSTRMDCHRHQRCINVEEIRITQTLLIVIAAFLVCFLPITIVTLAQSFMSP 329
>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
Length = 615
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 394 TGVQLFEEAPRCLSSKRRSGLN*AWGSEEVRKVGRRVDNA--KFVQLSPKNWTRDVTA 227
+GV+L E PR + R GSEEV ++G+R + VQ S +N +DV++
Sbjct: 214 SGVKLVERNPRYGEAWVRVATQSGLGSEEVGELGQRAKHCAESAVQSSGRNLCKDVSS 271
>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +1
Query: 481 CCCERSTHLPFDGRHLTFPGNCRYVLGARPRRLETSRWLIQLSKRKAQGLLFWEDKSGXF 660
C C + ++ DG+++ PG +R + LE +R+ + ++ LL E +
Sbjct: 1037 CICYAAAYMSLDGQNVNIPGRV-----SRKQGLEMARFRLDVTANIRPALLSVEMEEDKG 1091
Query: 661 IELKENGQAILNGAXKRVSRFI 726
+L G +V RF+
Sbjct: 1092 AHFTTAASDVLKGDATKVHRFV 1113
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 437 RSINPLDEVPSKLRAVVVNGQHIFRSTVATSPSQETVATYWAHD 568
+ + P D +P V +I ++ +T P Q VA ++ HD
Sbjct: 1693 QGVRPADRLPKHPHHVPTPSAYIAKTDPSTRPGQHWVALFFTHD 1736
>SB_24793| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
Length = 216
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 54 EKILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAV 233
E ++V +++ ++ T + H + Q + N + +KE R+ L+ V
Sbjct: 74 ETTIKVAAVIWITCLMVITTSYLAIFLKVKHQHHQHNMSNLQRSIQKERRLAVTLLLVTV 133
Query: 234 TSLVQFL 254
TSLV +L
Sbjct: 134 TSLVSWL 140
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 511 FDGRHLTFPGNCRYVL 558
FDGRH+ F G C Y L
Sbjct: 227 FDGRHIDFIGKCSYTL 242
>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 638 QNKSPWAFRFESWISQREVSNRRGRAPNT*RQFPGKV 528
QN P A FE+W ++ VSN R P R++P V
Sbjct: 701 QNYGPPASTFEAW-PRQSVSNNRMPNPRNTRRYPSPV 736
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,878,876
Number of Sequences: 59808
Number of extensions: 473790
Number of successful extensions: 1419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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