Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0265
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical ...    29   4.0  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   7.0  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   7.0  
AF099913-15|AAC68744.1|  284|Caenorhabditis elegans Hypothetical...    28   7.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U80023-13|AAG24043.2|  348|Caenorhabditis elegans Hypothetical p...    28   9.2  
U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical p...    28   9.2  

>AL032640-2|CAA21643.2|  502|Caenorhabditis elegans Hypothetical
           protein Y43F8A.2 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 84  YSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVV 209
           Y +I KLL   + +D AE  + YV+  L+ QK DD+  L V+
Sbjct: 151 YPHISKLL--YKPKDGAEESYFYVKSSLQFQKSDDKHVLNVL 190


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 632 KSPWAFRFESWISQREVSNRRGRAPNT*RQFPGKVRWRPSNGR 504
           +SP   R ES    R+ S+ R ++P   R+ P KV  +PS  R
Sbjct: 183 RSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSR 225


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 632 KSPWAFRFESWISQREVSNRRGRAPNT*RQFPGKVRWRPSNGR 504
           +SP   R ES    R+ S+ R ++P   R+ P KV  +PS  R
Sbjct: 183 RSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSR 225


>AF099913-15|AAC68744.1|  284|Caenorhabditis elegans Hypothetical
           protein C29F9.1 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 315 LPQAQLSPLRLLLERQRGASSNSCTPV 395
           +PQA + P+RL  E    A ++SC PV
Sbjct: 58  VPQALIEPIRLHREEDELAGTSSCRPV 84


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 29/99 (29%), Positives = 42/99 (42%)
 Frame = +3

Query: 276  ALSTRRPTLRTSSLPQAQLSPLRLLLERQRGASSNSCTPVISLTSWPFSEPTDLVASTH* 455
            ++ST      +SSLP    S  +       G+S  S +PV S TS   S PT+   ST  
Sbjct: 1375 SVSTTSLAPLSSSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTS---STPTNPTGSTE- 1430

Query: 456  MKCRLSSALLL*TVNTSSVRRSPPHLPRKLSLRIGRTTT 572
                LSS +   T +T+  + S        + + G T T
Sbjct: 1431 SSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTGSTVT 1469


>U80023-13|AAG24043.2|  348|Caenorhabditis elegans Hypothetical
           protein F07C4.12a protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 308 FFAAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 487
           FF      + A  +  E  +  FK+    +F D    +  Y  R ++P DE   K + V 
Sbjct: 135 FFTFNDDKRPANRILQELIYVSFKEDTGKEFEDTRDKVYKYYTRGVDPTDEKKLKEKLVE 194

Query: 488 VNGQHIFR-STVATS 529
             G  IF    +AT+
Sbjct: 195 FLGDFIFNGGAIATA 209


>U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical
           protein F07C4.12b protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 308 FFAAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 487
           FF      + A  +  E  +  FK+    +F D    +  Y  R ++P DE   K + V 
Sbjct: 351 FFTFNDDKRPANRILQELIYVSFKEDTGKEFEDTRDKVYKYYTRGVDPTDEKKLKEKLVE 410

Query: 488 VNGQHIFR-STVATS 529
             G  IF    +AT+
Sbjct: 411 FLGDFIFNGGAIATA 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,602
Number of Sequences: 27780
Number of extensions: 352751
Number of successful extensions: 996
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)