Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0265
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    30   2.1  
At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to Deg...    29   3.7  
At5g04730.1 68418.m00484 expressed protein ; expression supporte...    28   6.5  
At4g17330.1 68417.m02600 agenet domain-containing protein contai...    28   6.5  
At5g37010.1 68418.m04438 expressed protein                             28   8.6  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   8.6  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   8.6  

>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +3

Query: 48  VPEKILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKL 221
           + EK+ E TQ+L S + K L  +E R +AE      ++++  +    ++EL ++ ++L
Sbjct: 449 IKEKVNERTQLLKSELDKKL--EECRRMAEEFVEMERRRMEERIVQQQEELEMMRRRL 504


>At2g47940.1 68415.m05995 DegP2 protease (DEGP2) identical to DegP2
           protease GI:13172275 from [Arabidopsis thaliana];
           identical to cDNA  DegP2 protease (DEGP2) nuclear gene
           for chloroplast product GI:13172274
          Length = 607

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -3

Query: 683 CPFSFNSMNXPLLSSQNKSPWAFRFESWISQREVSN-----RRGRAP----NT*RQFPGK 531
           C FS  + +  + SS   SPW F   S ++ R  SN      R  +P    N  + +PG+
Sbjct: 8   CCFSVLNASVKIQSSSISSPWCFVSASSLTPRASSNIKRKSSRSDSPSPILNPEKNYPGR 67

Query: 530 VRWRPSN 510
           VR   SN
Sbjct: 68  VRDESSN 74


>At5g04730.1 68418.m00484 expressed protein ; expression supported
           by MPSS
          Length = 321

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 692 RIACPFSFNSMNXPLLSSQNKSPWAFRFESWISQREV--SNRRGRAP 558
           R++ P   + ++   L  Q +S W    ES +S+REV   N+  + P
Sbjct: 93  RLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTP 139


>At4g17330.1 68417.m02600 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = -1

Query: 448 VDATRSVGSEKGQDVREITGVQLFEEAP 365
           +DA +++ + K +D++E + V++F+E P
Sbjct: 580 IDAQQTIKATKNEDIKEGSNVEVFKEEP 607


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +3

Query: 126 DLAE-AIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSLVQFLGLS*T-----NLALST 287
           DL E +   YV  K      DD +E         T  + +VQ  G S +     N A ST
Sbjct: 511 DLMEPSFEKYVTVKRGGSSLDDMEEQESSGSNSFTGSSCVVQRQGYSSSSSWEPNSAEST 570

Query: 288 RRPTLRTSSLPQAQLSPLRLLLERQ 362
            R ++R+S+  +   SPL +  E+Q
Sbjct: 571 DRVSMRSSNKQERDRSPLGVNYEKQ 595


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 377 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 478
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 281 INTTPDFANFFAAPSSIKSAPSLAGEATWSFFKQL---YSGDFPDILA 415
           ++ +P+  + F   S  ++AP L   A W F K+    +  ++P+ +A
Sbjct: 465 LDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVA 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,384
Number of Sequences: 28952
Number of extensions: 338151
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)