Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0264
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 91 8e-20
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 51 1e-07
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 30 0.29
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 29 0.38
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 28 0.88
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 3.5
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 3.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 4.7
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 6.2
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 8.2
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 91.5 bits (217), Expect = 8e-20
Identities = 46/72 (63%), Positives = 51/72 (70%)
Frame = +1
Query: 241 TLPRIVGYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIY 420
T P G LGIA VA ++GAA GI G SI+GG VKAPRIKTKNLIS+IFCE VAIY
Sbjct: 40 TSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIY 99
Query: 421 GLITAIVLSGML 456
LI AIV S +
Sbjct: 100 SLIIAIVFSAKI 111
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +1
Query: 259 GYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAI 438
G +G ++ + GAA G GV I GV P + KN I V+ +AIYGL+ ++
Sbjct: 14 GVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSV 73
Query: 439 VLSGMLEK 462
++SG L++
Sbjct: 74 LISGNLKQ 81
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +1
Query: 265 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 444
LG SV L+ + A I G + V G + PR+ ++ +IF E + +YGLI A++L
Sbjct: 92 LGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151
Query: 445 S 447
+
Sbjct: 152 N 152
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 486 VRQAAELEAGYVMFGAGLAVGL 551
++Q L +G++ GAGL+VGL
Sbjct: 79 LKQILSLYSGFIQLGAGLSVGL 100
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 29.9 bits (64), Expect = 0.29
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Frame = -1
Query: 438 DSSDQTVNGDGL---AEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDS 268
D S+Q + G+ + G I S C + S+ + GC D K S
Sbjct: 191 DKSEQAPSSLGIYYRSPSSGSPIGRTKSVCLANKARIVPKRSMSSDGCVDKSYQMSKTPS 250
Query: 267 ---EVPHNTGKCSPRTIPNLSA 211
+P N+ CS R +P +
Sbjct: 251 LEANLPQNSSNCSARRVPKFDS 272
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.38
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 126 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 254
Y L L L+G+ F ++YY L + + +L FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 28.3 bits (60), Expect = 0.88
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 556 SPSPTASPAPNITYPASS 503
+P+PTA P PNIT P+ S
Sbjct: 552 NPAPTAMPHPNITSPSPS 569
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 444 EHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 271
E D++ +N A +G +L+ DS +++ +S VD+H S N KG+
Sbjct: 22 EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.0
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -1
Query: 366 SRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEVPHNTGKCSPRTIPNLSAHPFH*GRS 187
SR +T S + TS+V G S + S + T S ++ + SAH S
Sbjct: 581 SRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHS-----S 635
Query: 186 TAKISGLQVPPGARIS-NLRSISS*DFG*GIWCCFYPLI 73
+++ S + +PP A S +L+ IS + C F PL+
Sbjct: 636 SSRSSSMSLPPSAGSSTSLQRIS-------LLCVFIPLL 667
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +3
Query: 93 TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 200
+ ++N+N+ +R ++S++ + +A SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 164 CNPDIFAVLRPQWKG*ADKFGMVLGEHFPVLW 259
CNP+ W+G DK + G F +W
Sbjct: 52 CNPEDREYCGGNWRGIIDKLDYIQGMGFTAIW 83
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 266 RYPTIRGSVLQEPSQTYLLTLSIEDV 189
R P+ R SVL EP Q L + ED+
Sbjct: 323 RVPSARDSVLLEPFQPLQLDIQAEDI 348
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 409 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQ 498
++I + A +LS L Y+EPF +S KQ
Sbjct: 74 LSIIAICFACLLSPSLRPYAEPFIFLSYKQ 103
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 390 GDQILSLDSRCFDTSSHYADTSSVDAH 310
GD+ LS S H+AD +S D H
Sbjct: 652 GDEYLSAVSEFIQRCFHFADEASPDGH 678
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,388
Number of Sequences: 5004
Number of extensions: 57540
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -