Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0264
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP... 97 1e-20
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su... 97 1e-20
At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipi... 53 1e-07
At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipi... 53 1e-07
At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipi... 53 1e-07
At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipi... 53 1e-07
At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipi... 53 1e-07
At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ... 34 0.061
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 33 0.11
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ... 32 0.33
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 31 0.57
At5g25860.1 68418.m03068 F-box family protein contains F-box dom... 31 0.75
At3g61280.1 68416.m06858 expressed protein ; expression supporte... 30 1.00
At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel... 30 1.3
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ... 29 1.7
At3g48980.1 68416.m05350 expressed protein 29 1.7
At2g45840.1 68415.m05701 expressed protein 29 1.7
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 28 4.0
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 28 4.0
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ... 28 5.3
At3g57030.1 68416.m06348 strictosidine synthase family protein s... 27 7.0
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 27 7.0
At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel... 27 7.0
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 7.0
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 27 9.3
>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
cerevisiae}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 180
Score = 96.7 bits (230), Expect = 1e-20
Identities = 54/115 (46%), Positives = 72/115 (62%)
Frame = +1
Query: 238 RTLPRIVGYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAI 417
R P +GIA S+ +SV+GAA GI+ TG S++G ++APRI +KNLISVIFCEAVAI
Sbjct: 19 RISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAI 78
Query: 418 YGLITAIVLSGMLEKYSEPFTSVSVKQQNWRRDT*CSALDSLLGLVNPFCGIAVG 582
YG+I AI+L LE S P +S ++ R A ++G N CG+ VG
Sbjct: 79 YGVIVAIILQTKLE--SVP-SSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVG 130
>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
subunit family protein similar to SP|P23968 Vacuolar ATP
synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00137: ATP synthase subunit C
Length = 178
Score = 96.7 bits (230), Expect = 1e-20
Identities = 54/115 (46%), Positives = 72/115 (62%)
Frame = +1
Query: 238 RTLPRIVGYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAI 417
R P +GIA S+ +SV+GAA GI+ TG S++G ++APRI +KNLISVIFCEAVAI
Sbjct: 17 RISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAI 76
Query: 418 YGLITAIVLSGMLEKYSEPFTSVSVKQQNWRRDT*CSALDSLLGLVNPFCGIAVG 582
YG+I AI+L LE S P +S ++ R A ++G N CG+ VG
Sbjct: 77 YGVIVAIILQTKLE--SVP-SSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVG 128
>At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipid
subunit 3 / V-ATPase 16 kDa proteolipid subunit 3
(AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 259 GYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAI 438
G+LG A ++ S +GAA G +GV + GV P + K+++ V+ + IYGLI A+
Sbjct: 14 GFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAV 73
Query: 439 VLS 447
++S
Sbjct: 74 IIS 76
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 GYLGIAFSVALSVVG--AAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 432
GY ++ +A + G A M I G + V + P++ ++ +IF EA+A+YGLI
Sbjct: 91 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIV 150
Query: 433 AIVLS 447
I+LS
Sbjct: 151 GIILS 155
>At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipid
subunit 1 / V-ATPase 16 kDa proteolipid subunit 1
(AVAP1) (AVA-P1) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 259 GYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAI 438
G+LG A ++ S +GAA G +GV + GV P + K+++ V+ + IYGLI A+
Sbjct: 14 GFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAV 73
Query: 439 VLS 447
++S
Sbjct: 74 IIS 76
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 GYLGIAFSVALSVVG--AAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 432
GY ++ +A + G A M I G + V + P++ ++ +IF EA+A+YGLI
Sbjct: 91 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIV 150
Query: 433 AIVLS 447
I+LS
Sbjct: 151 GIILS 155
>At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipid
subunit 5 / V-ATPase 16 kDa proteolipid subunit 5
(AVAP5) identical to SP|P59227 Vacuolar ATP synthase 16
kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16
kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}
GI:926929; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 259 GYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAI 438
G+LG A ++ S +GAA G +GV + GV P + K+++ V+ + IYGLI A+
Sbjct: 14 GFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAV 73
Query: 439 VLS 447
++S
Sbjct: 74 IIS 76
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 GYLGIAFSVALSVVG--AAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 432
GY ++ +A + G A M I G + V + P++ ++ +IF EA+A+YGLI
Sbjct: 91 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIV 150
Query: 433 AIVLS 447
I+LS
Sbjct: 151 GIILS 155
>At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipid
subunit 4 / V-ATPase 16 kDa proteolipid subunit 4
(AVAP4) (AVA-P4) identical to SP|P59229 Vacuolar ATP
synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 4) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 166
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 259 GYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAI 438
G+LG A ++ S +GAA G +GV + GV P + K+++ V+ + IYGLI A+
Sbjct: 16 GFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAV 75
Query: 439 VLS 447
++S
Sbjct: 76 IIS 78
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 GYLGIAFSVALSVVG--AAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 432
GY ++ +A + G A M I G + V + P++ ++ +IF EA+A+YGLI
Sbjct: 93 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIV 152
Query: 433 AIVLS 447
I+LS
Sbjct: 153 GIILS 157
>At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipid
subunit 2 / V-ATPase 16 kDa proteolipid subunit 2
(AVAP2) (AVA-P2) identical to SP|Q39039 Vacuolar ATP
synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 2 {Arabidopsis
thaliana}, nearly identical to vacuolar H+-ATPase
proteolipid (16 kDa) subunit GI:755147 from [Gossypium
hirsutum]
Length = 165
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +1
Query: 259 GYLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAI 438
G+LG A ++ S +GAA G +GV + GV P + K+++ V+ + IYGLI A+
Sbjct: 15 GFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAV 74
Query: 439 VLS 447
++S
Sbjct: 75 IIS 77
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 GYLGIAFSVALSVVG--AAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLIT 432
GY ++ +A + G A M I G + V + P++ ++ +IF EA+A+YGLI
Sbjct: 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIV 151
Query: 433 AIVLS 447
I+LS
Sbjct: 152 GIILS 156
>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1889
Score = 34.3 bits (75), Expect = 0.061
Identities = 23/78 (29%), Positives = 29/78 (37%)
Frame = +3
Query: 87 NSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYCGVP 266
N Y+ + LKMR L G+ P G SL WF+ N
Sbjct: 1389 NQDNYMEEALKMRNLLQEFLTKHDGVRHPSILGLREHIFTGSVSSLAWFMSNQETSFVTI 1448
Query: 267 RNRLFRCPVRCRSSHGHP 320
RL P+R R +GHP
Sbjct: 1449 GQRLLANPLRVRFHYGHP 1466
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/78 (26%), Positives = 29/78 (37%)
Frame = +3
Query: 87 NSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYCGVP 266
N Y+ + KMR L V G+ P G SL WF+ N
Sbjct: 1348 NQDNYMEEAFKMRNLLQEFLVKHGGVRTPTILGLREHIFTGSVSSLAWFMSNQENSFVTI 1407
Query: 267 RNRLFRCPVRCRSSHGHP 320
R+ P++ R +GHP
Sbjct: 1408 GQRVLASPLKVRFHYGHP 1425
>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1923
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/78 (29%), Positives = 31/78 (39%)
Frame = +3
Query: 87 NSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYCGVP 266
N YL + LKMR L F G+ P + G SL WF+ N
Sbjct: 1315 NQDHYLEEALKMRNLLEE-FNEDHGVRAPTILGFREHIFTGSVSSLAWFMSNQETSFVTI 1373
Query: 267 RNRLFRCPVRCRSSHGHP 320
R+ P++ R +GHP
Sbjct: 1374 GQRVLASPLKVRFHYGHP 1391
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
synthase 1 nearly identical to callose synthase 1
catalytic subunit [Arabidopsis thaliana] GI:13649388
Length = 1922
Score = 31.1 bits (67), Expect = 0.57
Identities = 20/78 (25%), Positives = 28/78 (35%)
Frame = +3
Query: 87 NSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYCGVP 266
N Y+ + KMR L G+ P G SL WF+ N
Sbjct: 1311 NQDNYMEEAFKMRNLLQEFLEKHGGVRCPTILGLREHIFTGSVSSLAWFMSNQENSFVTI 1370
Query: 267 RNRLFRCPVRCRSSHGHP 320
R+ P++ R +GHP
Sbjct: 1371 GQRVLASPLKVRFHYGHP 1388
>At5g25860.1 68418.m03068 F-box family protein contains F-box domain
Pfam:PF00646
Length = 448
Score = 30.7 bits (66), Expect = 0.75
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 183 LYYVLNGKGE----QISLGWFLENTSPYCGVPRNRLFRCPVRCRSSHGHPHYWCQHSGRR 350
L Y GKGE Q S G F++ T C + CP++C +H W H+ R
Sbjct: 68 LVYPEEGKGEMKDVQESFGDFVDKTLTDCNTIKKLSILCPLKC-CAHKDIDQWLHHAMER 126
>At3g61280.1 68416.m06858 expressed protein ; expression supported
by MPSS
Length = 338
Score = 30.3 bits (65), Expect = 1.00
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 48 GEKRPSLSGLTGKNSTKYLNQNLKMRYFLSYLFVLLVG 161
G + + G+ ++Y+ +NLKM+Y Y+ +L G
Sbjct: 211 GNNNTEKAQIIGRQGSEYMMKNLKMKYVYDYMLYVLQG 248
>At2g24610.1 68415.m02940 cyclic nucleotide-regulated ion channel,
putative (CNGC14) similar to cyclic nucleotide and
calmodulin-regulated ion channel (GI:4581205)
[Arabidopsis thaliana]
Length = 726
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 379 NLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNW---RRDT 519
+++ +F VAI+GL+ +L G ++ Y + S++V+ + W RRDT
Sbjct: 373 SVLETMFAILVAIFGLVLFALLIGNMQTYLQ---SITVRLEEWRLKRRDT 419
>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1934
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/78 (26%), Positives = 27/78 (34%)
Frame = +3
Query: 87 NSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYCGVP 266
N Y + K+R L VG P G SL WF+ N
Sbjct: 1325 NQDNYFEEAFKLRNVLEEFNKERVGRRKPTILGLREHIFTGSVSSLAWFMSNQESSFVTI 1384
Query: 267 RNRLFRCPVRCRSSHGHP 320
R+ P+R R +GHP
Sbjct: 1385 GQRILANPLRVRFHYGHP 1402
>At3g48980.1 68416.m05350 expressed protein
Length = 539
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 81 GKNSTKYLNQNLKMRYFLSYLFVLLV 158
GK +++++ Q LKM Y Y+F LL+
Sbjct: 423 GKKASEFVQQELKMDYVYDYMFHLLI 448
>At2g45840.1 68415.m05701 expressed protein
Length = 523
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 81 GKNSTKYLNQNLKMRYFLSYLFVLL 155
G+N + Y+ +NLKM+Y Y+ LL
Sbjct: 405 GRNGSGYVRKNLKMKYVYDYMLHLL 429
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 394 IFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNW---RRDT 519
+FC + I+GLI +L G ++ S+SV+ + W RRDT
Sbjct: 346 LFCITICIFGLILFTLLIGNMQ---SSLQSMSVRVEEWRVKRRDT 387
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 207 GEQISLGWFLENTSPYCGVPRNRLFRCPVRCRSSHGHP 320
G SL WF+ N R+ P+R R +GHP
Sbjct: 1364 GSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHYGHP 1401
>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 470
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 309 HGHPHYWCQHSGRRCQS 359
H HP YW S +RCQ+
Sbjct: 308 HPHPLYWTLESSKRCQA 324
>At3g57030.1 68416.m06348 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 374
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = -3
Query: 130 KYLILRFWLRYLVLFLPVNPER-DGLFS---PDFCLDKKTQNGEVL 5
K + + W R LVL LP++P+R LF+ P K +++G+VL
Sbjct: 290 KLSLTQTWFRDLVLRLPISPQRLHSLFTGGIPHATAIKLSESGKVL 335
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 27.5 bits (58), Expect = 7.0
Identities = 23/78 (29%), Positives = 28/78 (35%)
Frame = +3
Query: 87 NSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISLGWFLENTSPYCGVP 266
N YL + KMR L F+ G P G SL WF+
Sbjct: 1370 NQDHYLEEAFKMRNLLQE-FLRNRGRRPPTILGLREHIFTGSVSSLAWFMSYQETSFVTI 1428
Query: 267 RNRLFRCPVRCRSSHGHP 320
RL P+R R +GHP
Sbjct: 1429 GQRLLANPLRVRFHYGHP 1446
>At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel,
putative (CNGC12) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc3) GI:4581201 from
[Arabidopsis thaliana]
Length = 636
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 391 VIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWRRDT 519
+ F + + GL+ VL G ++KY + T+ + + RRDT
Sbjct: 318 IFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDT 360
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -1
Query: 462 FLQHTREHDSSDQTVNGD-GLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQG 286
+L + D D + D G +EDDG+ S S D D+G G
Sbjct: 124 YLGDVSDDDGEDSHSDHDLGASEDDGEDSHSDHDLGASDDDGEDSHSDHDLGARDDDGNG 183
Query: 285 NGKGD 271
NG GD
Sbjct: 184 NGAGD 188
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 330 TSSVDAHGCSDNGQGNGKGDSEVPHNTGKCSPRTI 226
T +D + G N DS + +TG SPR +
Sbjct: 182 TGEIDVETAHETGPDNEPRDSNIAFDTGTYSPRNV 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,103
Number of Sequences: 28952
Number of extensions: 320940
Number of successful extensions: 1326
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -