Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0262
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.1  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   5.9  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   7.8  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   7.8  

>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 653 FKLVFPLVKLHVGYRPWVNTHFSXIEPXXXKIEYPVTKMKYPITILIL 510
           +K+   L+K+ + +   V   +  + P    +E+ +T +  P+T+LIL
Sbjct: 167 YKIYVTLLKIDIYFFLGVTVQYVMVLPEDAVVEFVLTILVLPLTVLIL 214


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 344 SYFKMHIKKRKPPKRGEC--ETLKELYPDLLS 433
           S F     KRK PK  EC  + LKE+YP++ S
Sbjct: 379 SLFTFEDCKRKLPK-AECAAQRLKEIYPNMFS 409


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = +3

Query: 420 QIYCRIKIGSKLKYLF-KILTQR-SSFNFI 503
           +IYCR+KI  +LK  F K L+++  S++FI
Sbjct: 60  EIYCRLKIRCRLKKKFIKSLSKKIISYHFI 89


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 287 ISKKRILVPWTTEQKSAVLSYFKMHIKKR 373
           IS+ + L   + + +SAV+++ +M IKKR
Sbjct: 260 ISRDKKLTTISKDARSAVMAFLEMDIKKR 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,840
Number of Sequences: 5004
Number of extensions: 50405
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)