Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0262
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0029 - 25194827-25195095,25195129-25197970                       28   6.2  
11_06_0124 + 20348269-20348413,20348753-20348874,20349210-203493...    28   8.1  

>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 248 SHQTLTLGQTNSKISKKRILVPWTTEQKSAVLSYFKMHIKKRKPPKRGECETLKELYPDL 427
           S+ TL+ G  NS  S K +L    + Q+S    YF   IKK +  K      +    P L
Sbjct: 498 SNNTLSGGIPNSLTSMKGLLT-CNSSQQSTETDYFPFFIKKNRTGKGLRYNQVSSFPPSL 556

Query: 428 LSNKDWL 448
           + + + L
Sbjct: 557 ILSHNML 563


>11_06_0124 +
           20348269-20348413,20348753-20348874,20349210-20349318,
           20349401-20349440,20350245-20350334,20350388-20350547,
           20350656-20350795,20351390-20351492,20351667-20352178,
           20352267-20352543
          Length = 565

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 293 KKRILVPWTTEQKSAVLSYFKMHIKK 370
           ++R+ VPW   ++ A+L YF++   K
Sbjct: 187 EERVKVPWPVSEREALLHYFELEYLK 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,966
Number of Sequences: 37544
Number of extensions: 279414
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)