Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0262
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11)                 39   0.004
SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)                  33   0.22 
SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 29   2.7  
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)                 28   6.3  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          28   6.3  

>SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11)
          Length = 153

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +2

Query: 308 VPWTTEQKSAVLSYFKMHIKKRKPPKRGECETLKELYPDLLSNKDWLKIKVFIQNTYSKK 487
           +PWT E+K A+   F+ +I++ + P + EC +  +     L  + W  +K +++    K+
Sbjct: 89  IPWTKEEKVAIFQQFEENIRRLRVPWKEECLSGIKFANGALDRRSWKIVKYYVKYQIDKR 148


>SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)
          Length = 1032

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 3    YRLPDDIYQTAKISKLLMLMEDGKADAYKGKS 98
            YRL +   + AK+SKLL+ +++G+    KGKS
Sbjct: 990  YRLHESTAELAKVSKLLIAVDEGRISHLKGKS 1021


>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 3   YRLPDDIYQTAKISKLLMLMEDGKADAYKG 92
           YRL +   + AK+SKLL+ +++G+    KG
Sbjct: 376 YRLHESTAELAKVSKLLIAVDEGRISHLKG 405


>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 794

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 341 LSYFKM-HIKKRK-PPKRGECETLKELYPDL 427
           L +F++ HI+K    P+RG CE L + YPD+
Sbjct: 83  LEFFRIRHIEKLPVSPERGGCEVLDQQYPDV 113


>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
          Length = 379

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 530 GISFLL-LGIQFFFFWVRSMKNVYSPRAC 613
           GI  LL LG Q F FW R  +   SPR C
Sbjct: 9   GIFILLGLGSQTFAFWFRRRRRSCSPRNC 37


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 158  ST*VCRIYGADCKCEPGTKFIRCKS 232
            ST + R+ G +C+C PG K I C S
Sbjct: 926  STCLDRLDGYECQCPPGLKGIYCSS 950


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,867,162
Number of Sequences: 59808
Number of extensions: 346091
Number of successful extensions: 1031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)