Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0262
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 31 0.79
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 31 0.79
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 31 0.79
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 28 7.3
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 28 7.3
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +2
Query: 305 LVPWTTEQKSAVLSYFKMHIKKRKPPKRGECETLKELYPDLLSNKDWLKIKVFIQNTYS 481
L+ + + K + L Y H++K + + L++++P LS D+LK+K F++ T S
Sbjct: 484 LLDFVNDLKKSGL-YLVGHVRKGEMDSSQVVDPLQQVFPYWLSLIDYLKLKAFVELTMS 541
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +2
Query: 305 LVPWTTEQKSAVLSYFKMHIKKRKPPKRGECETLKELYPDLLSNKDWLKIKVFIQNTYS 481
L+ + + K + L Y H++K + + L++++P LS D+LK+K F++ T S
Sbjct: 587 LLDFVNDLKKSGL-YLVGHVRKGEMDSSQVVDPLQQVFPYWLSLIDYLKLKAFVELTMS 644
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +2
Query: 305 LVPWTTEQKSAVLSYFKMHIKKRKPPKRGECETLKELYPDLLSNKDWLKIKVFIQNTYS 481
L+ + + K + L Y H++K + + L++++P LS D+LK+K F++ T S
Sbjct: 600 LLDFVNDLKKSGL-YLVGHVRKGEMDSSQVVDPLQQVFPYWLSLIDYLKLKAFVELTMS 657
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 170 CRIYGADCKCEPGTKFIRCK 229
C YG CKC+PG RC+
Sbjct: 1427 CEQYGGQCKCKPGVIGRRCE 1446
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 170 CRIYGADCKCEPGTKFIRCK 229
C YG CKC+PG RC+
Sbjct: 1427 CEQYGGQCKCKPGVIGRRCE 1446
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 170 CRIYGADCKCEPGTKFIRCK 229
C YG CKC+PG RC+
Sbjct: 1427 CEQYGGQCKCKPGVIGRRCE 1446
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 170 CRIYGADCKCEPGTKFIRCK 229
C YG CKC+PG RC+
Sbjct: 1427 CEQYGGQCKCKPGVIGRRCE 1446
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Frame = +2
Query: 170 CRIYGADCKCEPGTKFIRCK--SRGWHHSHQTLTLGQTNSKISKKRILVPWTTEQKSAVL 343
C C C+PG C ++G+ S T+T KI K + + ++
Sbjct: 422 CNQSSGQCVCKPGVTGTTCNRCAKGYQQSRSTVT---PCIKIPTKADFIGSSHSEEQDQC 478
Query: 344 SYFKM---HIKKRKPPKRGECETLKELYPDLLSNKDWLKIKVFIQNTYSKK*F*FHRGIK 514
S ++ + ++K KR + + +++ W K K+ +++ + + RG
Sbjct: 479 SKCRIVPKRLNQKKFCKRDHAVQMVVVSREMVDG--WAKYKIVVESVFKRGTENMQRGET 536
Query: 515 SIW 523
S+W
Sbjct: 537 SLW 539
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Frame = +2
Query: 170 CRIYGADCKCEPGTKFIRCK--SRGWHHSHQTLTLGQTNSKISKKRILVPWTTEQKSAVL 343
C C C+PG C ++G+ S T+T KI K + + ++
Sbjct: 422 CNQSSGQCVCKPGVTGTTCNRCAKGYQQSRSTVT---PCIKIPTKADFIGSSHSEEQDQC 478
Query: 344 SYFKM---HIKKRKPPKRGECETLKELYPDLLSNKDWLKIKVFIQNTYSKK*F*FHRGIK 514
S ++ + ++K KR + + +++ W K K+ +++ + + RG
Sbjct: 479 SKCRIVPKRLNQKKFCKRDHAVQMVVVSREMVDG--WAKYKIVVESVFKRGTENMQRGET 536
Query: 515 SIW 523
S+W
Sbjct: 537 SLW 539
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,634
Number of Sequences: 27780
Number of extensions: 274179
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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