Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0262
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   6.4  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   6.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.5  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 194 KCEPGTKFIRCKSR 235
           +C PG+KFI+ + R
Sbjct: 60  RCPPGSKFIKNRCR 73


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 194 KCEPGTKFIRCKSR 235
           +C PG+KFI+ + R
Sbjct: 60  RCPPGSKFIKNRCR 73


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 496 IS*GYKINMVIGYFIFVT 549
           +S  +K+   IGYF+F T
Sbjct: 231 LSLSFKLQRNIGYFVFQT 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,560
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)