Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0262
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52250.1 68416.m05742 myb family transcription factor contain...    28   6.8  
At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase fam...    28   6.8  
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    28   6.8  
At1g67480.1 68414.m07685 kelch repeat-containing F-box family pr...    27   9.0  

>At3g52250.1 68416.m05742 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 287 ISKKRILV-PWTTEQKSAVLSYFKMHIKKRK 376
           + K+R ++ PWT+E+K   L+   MH K  K
Sbjct: 879 VEKERTMINPWTSEEKEIFLNLLAMHGKDFK 909


>At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 7 AMPBP7 (AMPBP7)  GI:20799722
          Length = 569

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 673 TIPLGYVSNWCFPW 632
           T+P+ + + WCFPW
Sbjct: 244 TLPMFHCNGWCFPW 257


>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 305 LVPWTTEQKSAVLSYFKMHIKKR 373
           L+PW  EQ+  VL +F  ++  R
Sbjct: 818 LIPWNREQRQVVLKHFHRYVSHR 840


>At1g67480.1 68414.m07685 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 376

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 239 WHHSHQTLTLGQTNSKISKKRILVPWTTEQKSAVLS 346
           WH S   LT+   + ++ KK   + W   +K +V +
Sbjct: 266 WHGSKNGLTMVTAHVEVGKKLFCIDWKNHRKMSVFN 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,431
Number of Sequences: 28952
Number of extensions: 246572
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)