Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0260
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    30   0.44 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   1.0  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   3.1  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   5.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   5.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   7.2  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.2  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   9.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.5  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 610  LNVFEDTYKNRVLFTV*CINSVISCLSVGLATIRFWNVGYFQNQNIISG*LPXNSICYG 786
            LN+FE+T ++ V  +V   N+V+S L     T   W +  FQ     SG LP  S+ YG
Sbjct: 911  LNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKL--FQEMK-ESGLLP-TSVTYG 965


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = +1

Query: 220 PPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIP 399
           PP    + P T   P PT++S P  +    T    VP T T + +  L    C     +P
Sbjct: 400 PPTGNSTTPVTPTVP-PTSSSTPLTTTNCTTSTS-VPYTSTPVTSTPLATTNCTTSTSVP 457

Query: 400 YCTDSCKDANHYCPNC 447
           Y +           NC
Sbjct: 458 YTSTPVTSTPLTTTNC 473



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 220 PPAVRYSCPGTTMGPEP-TNTSCPSCSAAIVTRVDHVPVTKT 342
           PP    S  GT+  P P T+TSC + ++   T     PVT T
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT 358



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
 Frame = +1

Query: 220 PPAVRYSCPGTTMGPE-PTNTSCPSCSAAIVTRVDHVPVTKT---HLFALLLCLIGCCPC 387
           PP    S  GT+  P   T+TSC + ++   T     PVT T      +  L    C   
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430

Query: 388 ACIPYCTDSCKDANHYCPNC 447
             +PY +           NC
Sbjct: 431 TSVPYTSTPVTSTPLATTNC 450


>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 60  HFVIRETKSKWPIMNRKPICLAWATHRLHKI 152
           HF IR  +S   + NR+ I L W T   HK+
Sbjct: 9   HFGIRTPRSVCHVRNRENIYLYWTTFDAHKL 39


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -2

Query: 673 LNLYITL*IKLCFYMYPQTHLDLFVLQGKKRYLF 572
           LNL I    KLC Y+Y   HLD  V   K  YLF
Sbjct: 183 LNLTIEA-SKLCIYLYEARHLDQ-VWDEKSTYLF 214


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 223 PAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALL 360
           P V YSC         T T CP C A  + + +     KT  F+ L
Sbjct: 803 PFVSYSCLHLVHRDCATETVCPKCKAGYLDKKNSHDQKKTSTFSEL 848


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 661 CINSVISCLSVGL--ATIRFWNVGYFQNQNIISG 756
           C+  V + L+ G   ATIR WN+  FQ   ++ G
Sbjct: 278 CLQLVRNILASGSYDATIRLWNLATFQQVALLEG 311


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 220 PPAVRYSCPGTTMGPEPTNTSCPSCSAAIVT 312
           PP V    PG T+ P+PT    P  S+  V+
Sbjct: 589 PPRVPTPVPGRTLSPKPTRIPTPIPSSLNVS 619


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +1

Query: 169 PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHL 348
           PD    +   ++  PRAP     S   T +   P +TS P       T  +  PV +  L
Sbjct: 335 PDVYGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSL 394


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 444 LQRVHWKLQSLNISVGSIDH*LKNNILVLLFNSILS 551
           ++ ++W++ ++ IS+  I++ L  N+   L  SILS
Sbjct: 109 VKEINWEILAILISLSGIENGLVRNLSEFLSTSILS 144


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 136 TASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAA 303
           T++ KSA+   P+   S+P +    P +  A   S   T     P+N    + S A
Sbjct: 79  TSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEA 134


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 519 CYF*VNDQLNQLKYLAIVAS 460
           CYF VN   ++++Y+A+ AS
Sbjct: 11  CYFWVNGSSDEIRYVAVKAS 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,120
Number of Sequences: 5004
Number of extensions: 62674
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)