Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0260
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 31 0.81
06_03_0384 + 20174441-20175788,20176215-20176858 31 1.4
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 30 1.9
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 30 2.5
11_06_0258 + 21750922-21752272,21752971-21753377 29 3.3
11_06_0257 + 21746643-21748091 29 3.3
03_06_0722 - 35751490-35754357 29 3.3
02_03_0221 - 16554910-16555560 29 3.3
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128... 29 4.3
04_04_1108 + 30961600-30962013,30963131-30964465 29 4.3
11_06_0184 - 21006659-21009823 28 7.5
07_03_1406 + 26343915-26346032 28 7.5
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 28 7.5
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 9.9
03_02_0237 - 6674145-6674354,6674458-6675087,6675135-6675541,667... 28 9.9
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 31.5 bits (68), Expect = 0.81
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 139 ASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRV 318
A++K+ S Q P T +++P +AP A + P T P PT T+ P+ + A+ +
Sbjct: 86 ATSKAPSNQAPPT-QTVPAAP--ASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEA 142
Query: 319 DHVPVTKTHLFA 354
D+ ++L A
Sbjct: 143 DNYGQATSNLVA 154
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +1
Query: 205 RRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLF------ALLLC 366
RRP PP+ S P + G T T P+ +R H+ V + A+LLC
Sbjct: 246 RRPPPPPSPPPSHPHRSGGKNDTAT--PARRTRTRSRRKHLSVVTVAVVCGVVSVAMLLC 303
Query: 367 LIGCCPCACI 396
L+GC C +
Sbjct: 304 LVGCVACGVL 313
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 139 ASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCS-AAIVTR 315
+ST + P R+IP +P APPA S P T P T S P+ + A T
Sbjct: 84 SSTAKEPTKQPSVDRAIPTAPATQPPAPPA-PVSEPVTAPVPTATTASAPAAAVTAASTE 142
Query: 316 VDHVPVTKTHLFA 354
D+ ++L A
Sbjct: 143 ADNYGQAASNLVA 155
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 127 GLRTASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAI 306
GL A+T + V P+ A +PG+S R P PA + G E + PS S +I
Sbjct: 1621 GLTEANTFATRVMNPNAAEFVPGQS-RSPNGNPASPNGPLASPGGTEASPHGLPSPSDSI 1679
Query: 307 V 309
V
Sbjct: 1680 V 1680
>11_06_0258 + 21750922-21752272,21752971-21753377
Length = 585
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +1
Query: 196 RSFRR-----PRAPPAVRYSCPGTTMGPEPTNTSCPSCSA 300
R+FRR P+ PP + YSC GP+ CPS A
Sbjct: 49 RTFRRLRLPSPKQPPCLLYSC--DAYGPDAAGLYCPSTGA 86
>11_06_0257 + 21746643-21748091
Length = 482
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +1
Query: 196 RSFRR-----PRAPPAVRYSCPGTTMGPEPTNTSCPSCSA 300
R+FRR P+ PP + YSC GP+ CPS A
Sbjct: 49 RTFRRLRLPSPKQPPCLLYSC--DAYGPDAAGLYCPSTGA 86
>03_06_0722 - 35751490-35754357
Length = 955
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +1
Query: 178 ARSIPGRSFRRPRAPP-----AVRYSCPGTTMGPEP-TNTSCPSCSAAIVTR 315
AR +PG R P PP A R PG P P TNT+ + ++ +
Sbjct: 138 ARPLPGSLMRAPPPPPPPTAEAPRQRLPGAAASPAPATNTTAAAVEPVVILK 189
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 352 ALLLCLIGCCPCACIPYC-TDSCKDA 426
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>08_02_0497 -
17811413-17811529,17811644-17811724,17812693-17812815,
17812945-17813193
Length = 189
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 139 ASTKSASVQ*PDTARSIPGRSFRRPR-APPAVRYSCPG 249
A +AS+ A ++PGR+FR PR + P SC G
Sbjct: 2 AMAAAASLLPASAAPTLPGRAFRPPRNSTPTASLSCDG 39
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 169 PDTARSIPGRSFRRPRAPPAVRYSCPGT-TMGPEPTNTSCPSCSAAIVTRVDHVP 330
P A +PGR+ P A PA P T T PT SC C+A V V H P
Sbjct: 48 PRRALPLPGRASVVPSAVPA-----PATATAAAPPTRVSCGGCAA--VLSVPHGP 95
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 358 LLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQLVQLIIN 507
LL + C CA + CT+ K A + C N +A G + I+ LV + +N
Sbjct: 443 LLTSMSCSDCAVV-LCTNDSKMAKYCCSNDSANDGP--QIIYSLVDIYLN 489
>07_03_1406 + 26343915-26346032
Length = 705
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +1
Query: 178 ARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL 357
A ++ GR RPR PP + P TT ++C AA R H ++ A
Sbjct: 9 AAAVKGRIKSRPRLPP---LASPATT-------STCAPAPAATARRGSHAAASQVVSHAS 58
Query: 358 LLCLIGCCP 384
LL + CP
Sbjct: 59 LLLRLQSCP 67
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 142 STKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCP--GTTMGPEPTNTS 282
S + A ++ +A S+ GRSF P A RYS P T+ GP+ S
Sbjct: 338 SRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGPQSGEAS 386
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 379 NNLLGKEAKQTGGF*SLARDLLW*RLPHCMKGS 281
++L E + GG SL+R +L +P C+KGS
Sbjct: 171 DSLHDDELSRNGGILSLSRSILKLGVPECLKGS 203
>03_02_0237 -
6674145-6674354,6674458-6675087,6675135-6675541,
6677206-6677253,6677630-6677702
Length = 455
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 244 PGTTMGPE-PTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLI 372
PGTT G + P +SC + A+ R D V + +LLCL+
Sbjct: 408 PGTTQGQQVPQTSSCYIPAGAVSRRAD-AAVRRLVWLGVLLCLV 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,261,498
Number of Sequences: 37544
Number of extensions: 402639
Number of successful extensions: 1159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -