Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0260
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               33   0.36 
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             31   0.82 
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 30   1.9  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   30   1.9  
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               30   2.5  
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)         29   4.4  
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 29   4.4  
SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)                  29   5.8  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   7.7  
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 379 CPCACIPYCTDSCKDANHYCPNCNAYI 459
           CPC  + YC  +C    +YCP C  +I
Sbjct: 419 CPCGHV-YCCQTCASNLYYCPLCKTFI 444



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 379 CPCACIPYCTDSCKDANHYCPNCNAYIGSYNR*IFQL 489
           CPC  + +C+  C D   +CP CN  +    +  F +
Sbjct: 362 CPCGHLMFCS-RCADNMKFCPLCNESVNGNQKIYFAM 397


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = +1

Query: 208  RPRAPPAVRYSCPGTTMGPEPTNTS------CPSCSAAIVTRVDHVPVTKTHLFALLLCL 369
            R   P A RY CPG    P+P   +      CP  +A  +   ++     TH     LC 
Sbjct: 835  RVAGPCAERYYCPGANTRPDPPEFNCTIGHFCPGANAQPIPCQNNSFTKVTHAKECSLCP 894

Query: 370  IG-CCPCACIPYCTDSCKDANHYCP 441
             G  C  A IP     C    +YCP
Sbjct: 895  AGYYCEVAGIPLI---CPQ-GYYCP 915


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 681 LPKCWAGNYTILECWVFSKPKHYQWLIAXKFHMLWNL 791
           L  C A  +T+L    F KPK + WLI+  F ++ ++
Sbjct: 880 LTACTAAFFTMLYGLTFDKPKQHAWLISMFFSLVQDI 916


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 370 IGCCPCACIPYCTDSCKDANHYCPNCNAYI 459
           I  CP  C P C+D C     Y PN + ++
Sbjct: 705 IAPCPQVCAPACSDICCGFGAYAPNPDTHV 734


>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 193 GRSFRRPRAPPAVRYS------CPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHL 348
           G  +R+ R PP  + +      CP  T G       CP  ++ + T  D VP+ + +L
Sbjct: 105 GNYYRKRRCPPLTKGNYYRKRRCPPLTKGNYYRKRRCPPLTSVLTTGKDDVPLDQVYL 162


>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
          Length = 231

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 385 CACIPYCT---DSCKDANHYCP 441
           C C PYCT   D C D + +CP
Sbjct: 209 CRCDPYCTSFKDCCADFDTFCP 230


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +1

Query: 385 CACIPYCT---DSCKDANHYCP 441
           C C PYCT   D C D + +CP
Sbjct: 142 CRCDPYCTSFKDCCADFDTFCP 163


>SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = +3

Query: 426 KPLLSELQRVHWKLQSLNISVGSI 497
           KPL S +Q++H+K++++N+++ +I
Sbjct: 530 KPLNSLVQKIHFKMENINVALDAI 553


>SB_6299| Best HMM Match : RVT_1 (HMM E-Value=6.1e-33)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = +3

Query: 426 KPLLSELQRVHWKLQSLNISVGSI 497
           KPL S +Q++H+K++++N+++ +I
Sbjct: 101 KPLNSFVQKIHFKMENINVALDAI 124


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 358 LLCLIGCCPCACIPYCTDSCKDANHYCPN 444
           L C +GC P  C P CT +C       PN
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPN 468


>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 208 RPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTRVDHVPVT 336
           RP APP     CP    GP P     P C+  + T +   P T
Sbjct: 7   RPGAPPLATALCPTPCYGPVPHPLLRP-CAPPLATALSPPPAT 48


>SB_26070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 451 RCNSDSNGLHLCRSPCSKGYKH-MGNNLLGK 362
           RC  DSN   + ++ C K Y++  G+NL GK
Sbjct: 3   RCEQDSNLRGILQTKCRKMYRYGQGSNLRGK 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,862,098
Number of Sequences: 59808
Number of extensions: 494764
Number of successful extensions: 1464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)