Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0260
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    31   0.67 
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    31   1.2  
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    31   1.2  
At5g35604.1 68418.m04242 hypothetical protein                          30   1.6  
At1g51920.1 68414.m05853 expressed protein                             29   3.6  
At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein si...    29   4.7  
At3g09000.1 68416.m01053 proline-rich family protein                   28   6.3  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   6.3  

>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 184 SIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSC-SAAIVTRVDHVPVTKT 342
           S P R   R +   + R S P  +MGP P  T  PS  S    T+V  VP TK+
Sbjct: 376 SSPKRDKTRAQTDRSPRLSAPSRSMGPPPPVTVSPSSGSGDAGTKVILVPQTKS 429


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
 Frame = +1

Query: 136 TASTKSASVQ*PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPSCSAAIVTR 315
           T    ++ V+ P T   +   +   P  PP   Y+ P T + P       P     + TR
Sbjct: 156 TYKPPTSPVKPPTTTPPVKPPTTTPPVQPPT--YNPPTTPVKPPTAPPVKPPTPPPVRTR 213

Query: 316 VDHVPVTKTHL-------FALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNA 453
           +D VP+  T           +  C+  C  C C+P  T   K+    C +C A
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEK---CGSCYA 263


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 663 YKFSH*LPKCW--AGNYTILECWVFSKPKHYQWLIAXKFHMLWN 788
           YKF H   K    AG   ILE W+   P    WL   KF + +N
Sbjct: 129 YKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYN 172


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 169 PDTARSIPGRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPS 291
           P    S P R   R R   + R S P  TMGP P   + PS
Sbjct: 74  PSRGNSSPRRDKARARTDCSPRLSPPSRTMGPPPPVATSPS 114


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 205 RRPRAPPAVRYS-CPGTTM-GPEPTNTSCPSCSAAIVTRVDH 324
           R PRAP + R   CP      P P  + C  C++ IVT+  H
Sbjct: 32  RIPRAPISSRRPICPACVCCEPAPLGSCCRCCASPIVTQTHH 73


>At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 438

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   EADVDAIHFYSSLNSSGIKHFVIRETKSKWP 95
           +A VDA+  YS+LNS G K   I   ++ WP
Sbjct: 241 DAQVDAV--YSALNSMGFKDVEIMVAETGWP 269


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 133 RTASTKSASVQ*PDTARSIP---GRSFRRPRAPPAVRYSCPGTTMGPEPTNTSCPS 291
           RT +T S S +     RS P     S ++P + PA     P T  GP   ++  PS
Sbjct: 208 RTTTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRPSTPTGPSIVSSKAPS 263


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 403 CTDSCKDANHYCPNCNAYIGSYNR*IFQLV 492
           C+  C + ++ CP C+  IG+Y   I + V
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNYRSRIMERV 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,540,690
Number of Sequences: 28952
Number of extensions: 332116
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)