Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0259
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.2  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    25   4.9  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   6.5  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 198 EQKIKRKYFCSANLTFLVSAYFHI 269
           ++KI RK++C  N+T+  ++ FH+
Sbjct: 928 DRKILRKFWCRKNMTYDENSPFHV 951


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 339 YYFLG*NSLSDIFFNNPLINFRKICENKPTLKRLNW 232
           YY+L  +++ +  FNN  +N +      P    L W
Sbjct: 75  YYWLRKSAVDECCFNNNFLNLQPYQRTVPVASDLEW 110


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 123  NLPNSVIVNFQLT*DYNISSQNLKL 49
            N PN+++ N Q   DY  S Q L L
Sbjct: 948  NPPNTILFNGQQLSDYQYSDQTLSL 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,928
Number of Sequences: 5004
Number of extensions: 23536
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)