Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0256
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 139 3e-34
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 101 1e-22
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 96 4e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 79 6e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 2e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 67 3e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 63 3e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 63 4e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 62 5e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 3e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 9e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 58 2e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 5e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 54 1e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 51 2e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 50 4e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 9e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 1e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 47 3e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 46 5e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 1e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 43 5e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.3
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 3.3
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 26 4.4
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 5.8
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 139 bits (337), Expect = 3e-34
Identities = 64/84 (76%), Positives = 74/84 (88%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
RGVEI IATPGRL+D L+ T L+R TYLVLDEADRMLDMG EPQIRKI++QIRPDRQT
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT 303
Query: 185 LMWSATWPKEVKKLAEDYLGDYIR 256
+M+SATWPKEV++LA DYL DYI+
Sbjct: 304 VMFSATWPKEVQRLARDYLNDYIQ 327
Score = 83.0 bits (196), Expect = 4e-17
Identities = 47/137 (34%), Positives = 75/137 (54%)
Frame = +1
Query: 256 INIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENI 435
+ +GSL L+A+HNI QIV++ +K +L ++E+ + ++ K +IF TKR A++I
Sbjct: 328 VTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDN--KVLIFTGTKRVADDI 385
Query: 436 SRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX* 615
+R +R+ GWPA+ +HGDK Q ERD R + + G+DV GI +V
Sbjct: 386 TRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYD 445
Query: 616 LSKFVRGFTSIVLGRTG 666
+ + GRTG
Sbjct: 446 FPGNTEDYVHRI-GRTG 461
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 101 bits (241), Expect = 1e-22
Identities = 48/83 (57%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGT---TILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRP 172
+RG EIV+ TPGR+ID L T L RCTYLVLDEADRM D+G EPQ+ +II IRP
Sbjct: 539 KRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRP 598
Query: 173 DRQTLMWSATWPKEVKKLAEDYL 241
DRQT+++SAT+P+ ++ LA L
Sbjct: 599 DRQTVLFSATFPRAMEALARKVL 621
Score = 51.2 bits (117), Expect = 1e-07
Identities = 37/137 (27%), Positives = 67/137 (48%)
Frame = +1
Query: 256 INIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENI 435
I +G + A+ + QIV++ E K ++L LL E+ +Q +T++FV+ + A+ +
Sbjct: 627 ITVGGRSVVASE-VEQIVEVRPEESKFSRLLELLGELYNNQLD-VRTLVFVDRQESADAL 684
Query: 436 SRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX* 615
++ + G+ + +HG K Q +RD + V L + GLDV +Q V+
Sbjct: 685 LSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYD 744
Query: 616 LSKFVRGFTSIVLGRTG 666
+ + V GRTG
Sbjct: 745 CPNHMEDYVHRV-GRTG 760
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 96.3 bits (229), Expect = 4e-21
Identities = 45/88 (51%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIR---- 169
++G +++ ATPGRL+D +++G L +LVLDEADRMLDMG EPQIR I+E
Sbjct: 303 DQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSV 362
Query: 170 PDRQTLMWSATWPKEVKKLAEDYLGDYI 253
+RQTLM+SAT+P++++ LA D+L DY+
Sbjct: 363 EERQTLMFSATFPRDIQLLARDFLKDYV 390
Score = 56.8 bits (131), Expect = 3e-09
Identities = 39/129 (30%), Positives = 63/129 (48%)
Frame = +1
Query: 280 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 459
S + NI Q V ++ EK + L +L + P T+IFVETKR A+ ++ +
Sbjct: 399 STSENITQKVVHVEDSEKRSYLLDILHTL----PPEGLTLIFVETKRMADTLTDYLLNSN 454
Query: 460 WPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGF 639
+PA +HGD+TQ+ER+ R + + GLD+ + +VI L + +
Sbjct: 455 FPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDY 514
Query: 640 TSIVLGRTG 666
+ GRTG
Sbjct: 515 VHRI-GRTG 522
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 79.0 bits (186), Expect = 6e-16
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPD--- 175
+ ++I TPGRL+D + G+ + YLVLDEADRMLD G E IR II PD
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTR 342
Query: 176 ---RQTLMWSATWPKEVKKLAEDYLGDYIR 256
RQT+ +SATWP+ V+ LA +L D ++
Sbjct: 343 NGSRQTVFFSATWPESVRALAATFLKDPVK 372
Score = 50.0 bits (114), Expect = 3e-07
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Frame = +1
Query: 256 INIGSLQLSANHNILQIVDICQE-HEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
I IGS +L+A+ NI QIV+I + KE L+ LL++ S K +IFV K++A
Sbjct: 373 ITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAAR 432
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX 612
+ + R + V +HGD +Q R + + L + GLD+ +Q VI
Sbjct: 433 VEGTLAR-KYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINV 491
Query: 613 *LSKFVRGFTSIVLGRTG 666
+ + + GRTG
Sbjct: 492 TFPLTIEDYVHRI-GRTG 508
Score = 31.9 bits (69), Expect = 0.088
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARG 575
L FK G+ +LVATDVAARG
Sbjct: 459 LNDFKSGKCPVLVATDVAARG 479
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.0 bits (181), Expect = 2e-15
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 19/98 (19%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPD--- 175
+G IV+ATPGRL+D LE+ +L +CTY+V+DEADRMLDMG E + KI+ +
Sbjct: 374 QGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNAS 433
Query: 176 ----------------RQTLMWSATWPKEVKKLAEDYL 241
RQT+M+SAT P V LA+ YL
Sbjct: 434 EKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYL 471
Score = 56.8 bits (131), Expect = 3e-09
Identities = 31/104 (29%), Positives = 52/104 (50%)
Frame = +1
Query: 355 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKV 534
++EI +S IIFV KR E I++ + GW AV +HG K+Q++R+ R
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 535 VPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTG 666
L + G+D+ + V+ ++K + +T + GRTG
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRI-GRTG 608
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 66.9 bits (156), Expect = 3e-12
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Frame = +2
Query: 17 IVIATPGRLIDFLE--KGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
+++ TPGRL+D LE KG + L+ YL++DEADR+LDM P I KI++ I +R+TL+
Sbjct: 167 VLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLL 225
Query: 191 WSATWPKEVKKLAEDYLGDYIR 256
+SAT +V+KL L +R
Sbjct: 226 FSATMTSKVEKLQRASLHQPVR 247
Score = 32.7 bits (71), Expect = 0.050
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI--RPRVYIHRIG 656
L +FK G S LVATDVAARG P+ + + I + YIHR+G
Sbjct: 328 LNKFKSGARSTLVATDVAARGL---DIPLVDVVINYDIPTDSKAYIHRVG 374
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 385 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 504
G IIF T + ++ +R G+ A+ +HG +Q R
Sbjct: 285 GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNR 324
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.3 bits (147), Expect = 3e-11
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
V IV+ TPGR++D KG CT V+DEAD++L P I +++ +RQ +
Sbjct: 163 VHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISL 222
Query: 191 WSATWPKEVKKLAEDYLG-DYIRSI*DHYNFPQITTFF 301
+SAT+P VK + +L Y ++ D +T ++
Sbjct: 223 YSATFPLIVKNFMDKHLNKPYEINLMDELTLRGVTQYY 260
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 62.9 bits (146), Expect = 4e-11
Identities = 34/78 (43%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLE--KGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI-RPD 175
+GV +++ATPGRL+D L+ KG + + LV+DEADR+L++G E ++R+I++ + +
Sbjct: 210 KGVNLLVATPGRLLDHLQNTKGF-VFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSEN 268
Query: 176 RQTLMWSATWPKEVKKLA 229
RQTL++SAT +V+ LA
Sbjct: 269 RQTLLFSATQTTKVEDLA 286
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD----EFCISSRKVVPVFL*QL 558
K I+F+ + + ++ + P + +HG + QQ R EFC + + + L
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGI----LLCT 393
Query: 559 MLQLEGLDVDGIQYVIK 609
+ GLD+ + ++++
Sbjct: 394 NVAARGLDIPAVDWIVQ 410
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 62.5 bits (145), Expect = 5e-11
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+ GV +V+ TPGR+ D +++ VLDEAD ML G + QI I + + P Q
Sbjct: 135 QAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQ 194
Query: 182 TLMWSATWPKEVKKLAEDYLGDYIR 256
++ SAT P++V ++ ++ D IR
Sbjct: 195 VVLLSATMPQDVLEVTTKFMRDPIR 219
Score = 35.1 bits (77), Expect = 0.009
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+ +IF T+RK + ++ + + MHGD Q +RD R L L
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Query: 571 EGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTGTF 672
G+DV + VI L + + GR G F
Sbjct: 320 RGIDVQQVSLVINYDLPANRENYIHRI-GRGGRF 352
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLMW 193
+IV+ATPGR + + L Y+V DEADR+ +MG Q+ +I+ + RQTL++
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLF 250
Query: 194 SATWPKEVKKLAEDYLGD 247
SAT P+ + A+ L D
Sbjct: 251 SATLPRTLVDFAKAGLQD 268
Score = 29.1 bits (62), Expect = 0.62
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 522 FKEGRASILVATDVAARGA*C*WYPICN*XLIIQI--RPRVYIHRIG 656
F+ G+ ++LV TDVA+RG P+ + +P+V++HR+G
Sbjct: 392 FRLGKTNLLVVTDVASRGI---DIPLLANVINYDFPPQPKVFVHRVG 435
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 58.4 bits (135), Expect = 9e-10
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
+ I++ TPGRL+ +++ L+LDEADR+LDMG + I+ + RQT+
Sbjct: 161 MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTM 220
Query: 188 MWSATWPKEVKKLA 229
++SAT K VK LA
Sbjct: 221 LFSATQTKSVKDLA 234
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +2
Query: 14 EIVIATPGRLIDFLE--KGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
+IVIATPGR ID + +G T+ + +V+DEADRML+ G ++ +II+ RQT+
Sbjct: 382 DIVIATPGRFIDHMRNSQGFTV-ENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTM 440
Query: 188 MWSATWPKEVKKLAEDYLGDYIRSI*DH 271
++SAT +V L L +R D+
Sbjct: 441 LFSATMTDKVDDLIRLSLNRPVRVFVDN 468
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARG 575
L F++G+ + L+ATDVA+RG
Sbjct: 547 LEDFRDGKCNYLLATDVASRG 567
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.0 bits (129), Expect = 5e-09
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 16/101 (15%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIR---- 169
+GV I+I TPGRL D LE + + + ++VLDE DR++DMG E + KI+ +
Sbjct: 268 KGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSS 327
Query: 170 --------PDRQ-TLMWSATWPKEVKKLAEDYLGD--YIRS 259
P R+ T++ SAT VK+L++ L D Y++S
Sbjct: 328 IIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKS 368
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/83 (31%), Positives = 45/83 (54%)
Frame = +2
Query: 8 GVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
G +V TPGR+ D + + + L+LDEAD +L+ G + QI I + P Q +
Sbjct: 139 GQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVV 198
Query: 188 MWSATWPKEVKKLAEDYLGDYIR 256
+ SAT P++V ++ + + +R
Sbjct: 199 VVSATLPQDVLEMTNKFTTNPVR 221
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/94 (25%), Positives = 42/94 (44%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+ +IF ++RK + ++ +R + MHG+ Q+ERD R+ L +
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 571 EGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTGTF 672
G+DV + VI L + + GR+G F
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRI-GRSGRF 354
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
E+ +VI TPGRL + L ++ + L+LDEAD ++DMG + ++ II Q+ R+
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 182 TLMWSAT 202
T ++SAT
Sbjct: 188 TGLFSAT 194
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCT-YLVLDEADRMLDMGXEPQIRKIIEQIRPDR-QTLM 190
++IATPGRL D L+ + T +LDEADR++DMG I I E + + + L
Sbjct: 166 LLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLC 225
Query: 191 WSATWPKEVKKLAEDYLG 244
+SAT P +V + LG
Sbjct: 226 FSATMPPKVSNVFRGILG 243
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 492 STRKR*VLYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRVYIHRIG 656
+ ++R + F++ ++ IL ATDV ARG +P N ++QI YIHRIG
Sbjct: 329 TAQRRSITESFRKCQSGILFATDVVARGM---DFP--NITQVVQITGPSNTDDYIHRIG 382
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.4 bits (110), Expect = 9e-07
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLMW 193
+IVIATP R + + G L + +LV+DEAD ML G ++ + + Q+ +
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLM 201
Query: 194 SATWPKEVKKL 226
SAT K + L
Sbjct: 202 SATLSKNIASL 212
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLD-MGXEPQIRKIIEQIRPDRQTLM 190
+IVI TPG ++D +++ + VLDEAD MLD G Q +I + + Q ++
Sbjct: 232 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 291
Query: 191 WSATWPKEVKKLAEDY 238
+SAT+ + V+K AE +
Sbjct: 292 FSATFSERVEKYAERF 307
Score = 39.5 bits (88), Expect = 4e-04
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Frame = +1
Query: 169 PRQTDFDVVSY-LAQRSEETC*GLLGRLHSINIGSLQLSANHNILQIVDICQEHEKENKL 345
PR T + S ++R E+ + I + + +LS I Q+ CQ +E+K
Sbjct: 284 PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVE-GIKQLYMDCQS--EEHKY 340
Query: 346 NVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISS 525
NVL++ G ++IIF + K AE I+R + G C+ G+ +RD S
Sbjct: 341 NVLVELYGLLTI--GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSF 398
Query: 526 RKVVPVFL*QLMLQLEGLDVDGIQYVI 606
R L + G+DV + V+
Sbjct: 399 RVGTSKVLVTTNVIARGIDVSQVNLVV 425
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLD-MGXEPQIRKIIEQIRPDRQTLMW 193
IV+ATPGRL + + + + VLDE D++L+ + I+++ P +Q +M+
Sbjct: 176 IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMF 235
Query: 194 SATWPKEVKKLAEDYL 241
SAT E++ + + ++
Sbjct: 236 SATLSNEIRPICKKFM 251
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 289 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 468
H + Q +E K K+N LL + +Q +IFV++ +A + R +R +P+
Sbjct: 268 HGLQQHYVKLEEKAKNRKINDLLDSLEFNQ-----VVIFVKSVSRANELDRLLRECNFPS 322
Query: 469 VCMHGDKTQQER 504
+C+HG Q+ER
Sbjct: 323 ICIHGGLPQEER 334
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 46.0 bits (104), Expect = 5e-06
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQI 166
++++++TPGRL+D + + LQ Y+V+DEADR+LD + + ++ +I
Sbjct: 261 IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.8 bits (101), Expect = 1e-05
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKG--TTI--LQRCTYLVLDEADRMLDMGXEPQIRKIIEQI--RPDR 178
+V+ATPGRL D + TI L+R +LV+DEADR+L + + DR
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 179 QTLMWSATWPKEVKKL 226
QTL+++AT +++L
Sbjct: 188 QTLLFTATVTDAIRQL 203
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRVYIHRIG 656
L +F+ A ILVATDVA+RG I + L+I P YIHR+G
Sbjct: 301 LGRFRAEAAKILVATDVASRG-----LDIPSVQLVINFDLPRDPDDYIHRVG 347
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKG--TTILQRCTYLVLDEADRMLDMGXEPQIRKIIE----QIRPDR 178
+V+ATPGRL + + T ++ LVLDEADR+L ++ K++E + R
Sbjct: 245 VVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQR 304
Query: 179 QTLMWSATWPKEV-KKLAEDYLGDYIRSI*DHYNFP 283
QT ++SAT+ + + ++L ++ G +I + YN P
Sbjct: 305 QTFIFSATFDEGLQQRLKKNMKG----NITEKYNSP 336
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARG 575
L +FK +LV TDVAARG
Sbjct: 432 LEKFKNNPKGVLVCTDVAARG 452
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR-QTLM 190
++ I TP RL+ ++ G + ++ + V+DEADR+ + G Q I+ +
Sbjct: 168 DMCIGTPMRLVQAIQTGLSF-EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSL 226
Query: 191 WSATWPKEVKKLAEDYLGDYIRSI 262
+SAT P V++LA+ D IR I
Sbjct: 227 FSATIPSRVEELAKVVTVDPIRII 250
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARG 575
L +F++G +L+ATD+ ARG
Sbjct: 331 LAKFRKGEIWVLIATDLLARG 351
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 498 RKR*VLYQFKEGRASILVATDVAARG 575
R++ L++FK G+ ++L+AT VA G
Sbjct: 411 RQKDTLHKFKTGKYNVLIATAVAEEG 436
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 469 VCMHGDKTQQERDEFCIS 522
+C HGDK +RDEF ++
Sbjct: 865 LCDHGDKGSLDRDEFAVA 882
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 361 LAIIHLIYFLFHVLDKYLQFEECCDLRKVVMILY*SNVVSQVIL 230
LAI+ +I+F +LD + F C+L + S ++ ++IL
Sbjct: 79 LAILEMIHFFVEILDSF--FGNVCELDLIFNFYKVSAILDEIIL 120
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 181 DFDVVSYLAQRSEETC*GLLGRLHSINIGSLQLSANHN 294
D D V + Q C G +G LH+++ G L+ N N
Sbjct: 68 DSDKVLWYPQTIPNAC-GTIGLLHAVSNGELRRKVNEN 104
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 155 IEQIRPDRQTLMWSATWPKEVKKLAED 235
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 128 PYPTYDQPHQELNMCTAVRWLCPF 57
PY + D +E+N+ AVR L PF
Sbjct: 208 PYDSDDADEEEINLNAAVRNLIPF 231
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 427 QLFSWFQQKLLFSHQVLDFVQFLA 356
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,812
Number of Sequences: 5004
Number of extensions: 56966
Number of successful extensions: 233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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