Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0256
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       90   2e-20
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
 Frame = +2

Query: 8   GVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKII--EQIRP--D 175
           G  I++ATPGRL+DF+EKG        +LVLDEADRMLDMG  P I K++  E + P  +
Sbjct: 323 GCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGE 382

Query: 176 RQTLMWSATWPKEVKKLAEDYLGDYI 253
           RQTLM+SAT+P EV+ LA  +L +Y+
Sbjct: 383 RQTLMFSATFPDEVQHLARRFLNNYL 408



 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 32/114 (28%), Positives = 58/114 (50%)
 Frame = +1

Query: 325 HEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 504
           ++K++ L  +L+    S   G  T++FVE K+KA+ I+  +    +P   +HGD+ Q++R
Sbjct: 432 NKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 490

Query: 505 DEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTG 666
           +E     +      L    +   GLD+  + +VI   L K +  +   + GRTG
Sbjct: 491 EEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRI-GRTG 543


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 477 AWR*NSTRKR*VLYQFKEGRASI 545
           AW+ N  RK+  L+QF  G+  +
Sbjct: 172 AWQWNEERKQYYLHQFATGQPDL 194


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 409 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 510
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 322 EHEKENKLNVLLQEIG 369
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,415
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)