Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0256
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 133 9e-32
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 133 9e-32
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 128 3e-30
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 113 1e-25
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 112 2e-25
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 110 1e-24
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 110 1e-24
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 110 1e-24
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 110 1e-24
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 107 5e-24
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 107 5e-24
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 102 3e-22
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 102 3e-22
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 100 1e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 97 7e-21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 86 2e-17
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 84 7e-17
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 82 3e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 81 7e-16
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 79 4e-15
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 79 4e-15
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 77 1e-14
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 77 1e-14
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 74 8e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 74 8e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 74 8e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 73 2e-13
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 66 2e-11
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 66 2e-11
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 66 2e-11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 66 2e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 65 5e-11
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 64 6e-11
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 64 1e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 64 1e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 64 1e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 63 1e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 61 6e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 61 6e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 61 6e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 61 6e-10
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 61 6e-10
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 60 1e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 60 1e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 60 1e-09
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 60 1e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 60 1e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 58 4e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 58 7e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 57 9e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 56 2e-08
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 52 5e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 52 5e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 52 5e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 46 2e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 3e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 45 5e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 44 1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 43 2e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 42 3e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 5e-04
At2g28600.1 68415.m03476 expressed protein 37 0.014
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 34 0.076
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 31 0.71
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 31 0.93
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 31 0.93
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 31 0.93
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 31 0.93
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 27 8.7
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 133 bits (322), Expect = 9e-32
Identities = 64/86 (74%), Positives = 72/86 (83%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
RGVEIVIATPGRLID LE T L+R TYLVLDEADRMLDMG EPQIRKI+ QIRPDRQT
Sbjct: 287 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 346
Query: 185 LMWSATWPKEVKKLAEDYLGDYIRSI 262
L+WSATWP+EV+ LA +L D ++I
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAI 372
Score = 85.8 bits (203), Expect = 2e-17
Identities = 49/135 (36%), Positives = 73/135 (54%)
Frame = +1
Query: 262 IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISR 441
IGS L AN +I Q+++I EK N+L LL+++ G+K +IFVETKR + ++R
Sbjct: 373 IGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRGCDQVTR 428
Query: 442 NIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LS 621
+R GWPA+ +HGDKTQ ERD + + + GLDV I+ V+
Sbjct: 429 QLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFP 488
Query: 622 KFVRGFTSIVLGRTG 666
+ + + GRTG
Sbjct: 489 NTLEDYIHRI-GRTG 502
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 133 bits (322), Expect = 9e-32
Identities = 64/86 (74%), Positives = 72/86 (83%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
RGVEIVIATPGRLID LE T L+R TYLVLDEADRMLDMG EPQIRKI+ QIRPDRQT
Sbjct: 287 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 346
Query: 185 LMWSATWPKEVKKLAEDYLGDYIRSI 262
L+WSATWP+EV+ LA +L D ++I
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAI 372
Score = 81.0 bits (191), Expect = 7e-16
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +1
Query: 262 IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISR 441
IGS L AN +I Q+++I EK N+L LL+++ G+K +IFVETKR + ++R
Sbjct: 373 IGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRGCDQVTR 428
Query: 442 NIRRYGWPAVCMHGDKTQQERD 507
+R GWPA+ +HGDKTQ ERD
Sbjct: 429 QLRMDGWPALAIHGDKTQSERD 450
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 456 WLASCLHAWR*NSTRKR*VLYQFKEGRASILVATDVAARG 575
W A +H + S R R VL +FK GR+ I+ ATDVAARG
Sbjct: 435 WPALAIHGDKTQSERDR-VLAEFKSGRSPIMTATDVAARG 473
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 128 bits (310), Expect = 3e-30
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
++GVEIVIATPGRLID +E T L+R TYLVLDEADRMLDMG +PQIRKI+ IRPDRQ
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQ 279
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TL WSATWPKEV++L++ +L
Sbjct: 280 TLYWSATWPKEVEQLSKKFL 299
Score = 87.0 bits (206), Expect = 1e-17
Identities = 50/139 (35%), Positives = 76/139 (54%)
Frame = +1
Query: 250 HSINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 429
+ + IGS L AN I QIVD+ E +K NKL LL++I G++ ++F++TK+ +
Sbjct: 303 YKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCD 358
Query: 430 NISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIK 609
I+R +R GWPA+ +HGDK+Q ERD R + + GLDV ++YVI
Sbjct: 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVIN 418
Query: 610 X*LSKFVRGFTSIVLGRTG 666
+ + + GRTG
Sbjct: 419 YDFPGSLEDYVHRI-GRTG 436
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 113 bits (272), Expect = 1e-25
Identities = 53/80 (66%), Positives = 64/80 (80%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
ERGV+IV+ATPGRL D LE L + +YLVLDEADRMLDMG EPQIRKI+ ++ RQ
Sbjct: 349 ERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQ 408
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TLM++ATWPKEV+K+A D L
Sbjct: 409 TLMYTATWPKEVRKIAADLL 428
Score = 75.4 bits (177), Expect = 3e-14
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Frame = +1
Query: 256 INIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
+NIG++ +L AN +I Q +++ EK ++L +L+ SQEPG+K IIF TKR +
Sbjct: 434 VNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILR----SQEPGSKIIIFCSTKRMCDQ 489
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX 612
++RN+ R + A +HGDK+Q ERD+ R L + GLDV I+ V+
Sbjct: 490 LARNLTR-TFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNY 548
Query: 613 *LSKFVRGFTSIVLGRTG 666
V + + GRTG
Sbjct: 549 DFPNGVEDYVHRI-GRTG 565
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 112 bits (269), Expect = 2e-25
Identities = 53/80 (66%), Positives = 63/80 (78%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
ERG +IV+ATPGRL D LE Q+ + LVLDEADRMLDMG EPQIRKI+ +I P RQ
Sbjct: 555 ERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ 614
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TLM++ATWPKEV+K+A D L
Sbjct: 615 TLMYTATWPKEVRKIASDLL 634
Score = 74.9 bits (176), Expect = 4e-14
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 256 INIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
+NIG + +L+AN I Q V++ + EKE +L +L+ SQE G+K IIF TKR ++
Sbjct: 640 VNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR----SQERGSKVIIFCSTKRLCDH 695
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX 612
++R++ R+ + AV +HGDKTQ ERD R L + GLD+ I+ VI
Sbjct: 696 LARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINY 754
Query: 613 *LSKFVRGFTSIVLGRTG 666
V + + GRTG
Sbjct: 755 DFPTGVEDYVHRI-GRTG 771
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 110 bits (264), Expect = 1e-24
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
ERG +IV+ATPGRL D LE L++ +YLVLDEADRMLDMG EPQIRKI+++I RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TLM++ATWPK V+K+A D L
Sbjct: 338 TLMYTATWPKGVRKIAADLL 357
Score = 74.5 bits (175), Expect = 6e-14
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Frame = +1
Query: 256 INIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR +
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQ 418
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX 612
++RN+ R + A +HGDK+Q ERD R L + GLDV I+ V+
Sbjct: 419 LTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNY 477
Query: 613 *LSKFVRGFTSIVLGRTG 666
V + + GRTG
Sbjct: 478 DFPNGVEDYVHRI-GRTG 494
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 110 bits (264), Expect = 1e-24
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
ERG +IV+ATPGRL D LE L++ +YLVLDEADRMLDMG EPQIRKI+++I RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TLM++ATWPK V+K+A D L
Sbjct: 338 TLMYTATWPKGVRKIAADLL 357
Score = 74.5 bits (175), Expect = 6e-14
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Frame = +1
Query: 256 INIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR +
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQ 418
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX 612
++RN+ R + A +HGDK+Q ERD R L + GLDV I+ V+
Sbjct: 419 LTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNY 477
Query: 613 *LSKFVRGFTSIVLGRTG 666
V + + GRTG
Sbjct: 478 DFPNGVEDYVHRI-GRTG 494
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 110 bits (264), Expect = 1e-24
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
ERG +IV+ATPGRL D LE L++ +YLVLDEADRMLDMG EPQIRKI+++I RQ
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TLM++ATWPK V+K+A D L
Sbjct: 338 TLMYTATWPKGVRKIAADLL 357
Score = 74.5 bits (175), Expect = 6e-14
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Frame = +1
Query: 256 INIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR +
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQ 418
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX 612
++RN+ R + A +HGDK+Q ERD R L + GLDV I+ V+
Sbjct: 419 LTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNY 477
Query: 613 *LSKFVRGFTSIVLGRTG 666
V + + GRTG
Sbjct: 478 DFPNGVEDYVHRI-GRTG 494
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 110 bits (264), Expect = 1e-24
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +2
Query: 8 GVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
G EIV+ATPGRLID L+ + R +YLVLDEADRM D+G EPQ+R I+ QIRPDRQTL
Sbjct: 351 GCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTL 410
Query: 188 MWSATWPKEVKKLAEDYLGDYIR 256
++SAT P +V+KLA + L D IR
Sbjct: 411 LFSATMPWKVEKLAREILSDPIR 433
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 465 SCLHAWR*NSTRKR*VLYQFKEGRASILVATDVAARG 575
+ LH + ++R L +FK G +L+ATDVAARG
Sbjct: 501 AALHGDKDQASRME-TLQKFKSGVHHVLIATDVAARG 536
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 107 bits (258), Expect = 5e-24
Identities = 52/88 (59%), Positives = 70/88 (79%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI-RPD- 175
ERGV+I++ATPGRL D LE+G LQ +L LDEADRMLDMG EPQIRKI++Q+ P
Sbjct: 272 ERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPP 331
Query: 176 --RQTLMWSATWPKEVKKLAEDYLGDYI 253
RQT+++SAT+P+E+++LA D+L +YI
Sbjct: 332 GVRQTMLFSATFPREIQRLASDFLSNYI 359
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Frame = +1
Query: 280 SANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVETKRKAENISRNIRR 453
S+ I+Q V+ + +K + L LL Q +Q A T++FVETK+ A+++ +
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427
Query: 454 YGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVR 633
G+PA +HGD++QQER+ S + L + GLD+ + +V+ L +
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 487
Query: 634 GFTSIVLGRTG 666
+ + GRTG
Sbjct: 488 DYVHRI-GRTG 497
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 107 bits (258), Expect = 5e-24
Identities = 52/88 (59%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI----R 169
ERGV+I++ATPGRL D LE+ +Q +L LDEADRMLDMG EPQIRKI+EQ+ R
Sbjct: 285 ERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPR 344
Query: 170 PDRQTLMWSATWPKEVKKLAEDYLGDYI 253
RQTL++SAT+P+E+++LA D+L +YI
Sbjct: 345 GVRQTLLFSATFPREIQRLAADFLANYI 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = +1
Query: 280 SANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVETKRKAENISRNIRR 453
S+ I+Q V+ + +K + L LL Q Q A T++FVETKR A+++ +
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440
Query: 454 YGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVR 633
G+PA +HGD+TQQER+ + + L + GLD+ + +V+ L +
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 500
Query: 634 GFTSIVLGRTG 666
+ + GRTG
Sbjct: 501 DYVHRI-GRTG 510
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 102 bits (244), Expect = 3e-22
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI----R 169
ERG +I++ATPGRL D LE+ +Q +L LDEADRMLDMG EPQIRKI+EQ+ R
Sbjct: 277 ERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPR 336
Query: 170 PDRQTLMWSATWPKEVKKLAEDYLGDYI 253
RQT+++SAT+P ++++LA D++ +YI
Sbjct: 337 GVRQTMLFSATFPSQIQRLAADFMSNYI 364
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/129 (31%), Positives = 66/129 (51%)
Frame = +1
Query: 280 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 459
S+ I Q V+ QE +K + L LL ++Q+ + T++FVETKR A+ + +
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 460 WPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGF 639
+PA +HGD+TQQER+ S + L + GLD+ + +V+ L + +
Sbjct: 433 FPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
Query: 640 TSIVLGRTG 666
+ GRTG
Sbjct: 493 VHRI-GRTG 500
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 102 bits (244), Expect = 3e-22
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI----R 169
ERG +I++ATPGRL D LE+ +Q +L LDEADRMLDMG EPQIRKI+EQ+ R
Sbjct: 277 ERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPR 336
Query: 170 PDRQTLMWSATWPKEVKKLAEDYLGDYI 253
RQT+++SAT+P ++++LA D++ +YI
Sbjct: 337 GVRQTMLFSATFPSQIQRLAADFMSNYI 364
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/129 (31%), Positives = 66/129 (51%)
Frame = +1
Query: 280 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 459
S+ I Q V+ QE +K + L LL ++Q+ + T++FVETKR A+ + +
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 460 WPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGF 639
+PA +HGD+TQQER+ S + L + GLD+ + +V+ L + +
Sbjct: 433 FPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
Query: 640 TSIVLGRTG 666
+ GRTG
Sbjct: 493 VHRI-GRTG 500
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 100 bits (239), Expect = 1e-21
Identities = 48/83 (57%), Positives = 64/83 (77%), Gaps = 3/83 (3%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGT---TILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRP 172
+RG EIV+ TPGR+ID L + T L+R TYLV+DEADRM DMG EPQI +I++ IRP
Sbjct: 517 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 576
Query: 173 DRQTLMWSATWPKEVKKLAEDYL 241
DRQT+++SAT+P++V+ LA L
Sbjct: 577 DRQTVLFSATFPRQVETLARKVL 599
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 97.5 bits (232), Expect = 7e-21
Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 3/83 (3%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGT---TILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRP 172
+RG EIV+ TPGR+ID L + T L+R T+LV+DEADRM DMG EPQI +II+ IRP
Sbjct: 650 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRP 709
Query: 173 DRQTLMWSATWPKEVKKLAEDYL 241
+RQT+++SAT+P++V+ LA L
Sbjct: 710 ERQTVLFSATFPRQVETLARKVL 732
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/144 (25%), Positives = 71/144 (49%)
Frame = +1
Query: 235 LLGRLHSINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVET 414
+L + I +G + N +I Q+V++ E ++ +L L+ +G+ E G K ++FV++
Sbjct: 731 VLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRL---LELLGEWSEKG-KILVFVQS 785
Query: 415 KRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGI 594
+ K + + R++ + +P + +HG K Q +R+ + V L + GLDV +
Sbjct: 786 QEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKEL 845
Query: 595 QYVIKX*LSKFVRGFTSIVLGRTG 666
+ V+ + V GRTG
Sbjct: 846 ELVVNFDAPNHYEDYVHRV-GRTG 868
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 85.8 bits (203), Expect = 2e-17
Identities = 40/78 (51%), Positives = 54/78 (69%)
Frame = +2
Query: 8 GVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
GV+IVI TPGRL D +E L +++VLDEADRMLDMG E +R I+ RQ +
Sbjct: 241 GVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMV 300
Query: 188 MWSATWPKEVKKLAEDYL 241
M+SATWP +V KLA++++
Sbjct: 301 MFSATWPLDVHKLAQEFM 318
Score = 71.7 bits (168), Expect = 4e-13
Identities = 40/135 (29%), Positives = 73/135 (54%)
Frame = +1
Query: 262 IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISR 441
IGS+ L+ANH+++QI+++ E ++ +L LL++ +SQ+ + ++F K +AE + R
Sbjct: 327 IGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQK--NRVLVFALYKVEAERLER 384
Query: 442 NIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LS 621
+++ GW AV +HG+K Q ER ++ L + GLD+ ++ VI
Sbjct: 385 FLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFP 444
Query: 622 KFVRGFTSIVLGRTG 666
+ + GRTG
Sbjct: 445 LTTEDYVHRI-GRTG 458
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 84.2 bits (199), Expect = 7e-17
Identities = 39/80 (48%), Positives = 53/80 (66%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+RGV IV+ATPGRL D L K L C YL LDEADR++D+G E IR++ + + RQ
Sbjct: 276 KRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQ 335
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TL++SAT P +++ A L
Sbjct: 336 TLLFSATMPTKIQIFARSAL 355
Score = 46.4 bits (105), Expect = 2e-05
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Frame = +1
Query: 253 SINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
++N+G +AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K ++
Sbjct: 360 TVNVGRAG-AANLDVIQEVEYVKQ---EAKIVYLLECLQKTSPP---VLIFCENKADVDD 412
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKV-VPVFL*QLMLQLEGLDVDGIQYVIK 609
I + G AV +HG K Q++R E+ ISS K L + +GLD IQ+VI
Sbjct: 413 IHEYLLLKGVEAVAIHGGKDQEDR-EYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 471
Query: 610 X*LSKFVRGFTSIVLGRTG 666
+ + + + GRTG
Sbjct: 472 YDMPAEIENYVHRI-GRTG 489
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
RGV++V+ TPGR+ID +E + L YLVLDEAD+ML +G E + I+E + RQ+
Sbjct: 227 RGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQS 286
Query: 185 LMWSATWPKEVKKLAEDYL 241
+++SAT P VKKLA YL
Sbjct: 287 MLFSATMPTWVKKLARKYL 305
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/94 (29%), Positives = 42/94 (44%)
Frame = +1
Query: 385 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLML 564
G KTI+F +TKR A+ +S + +HGD +Q +R+ + R+ L +
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDV 409
Query: 565 QLEGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTG 666
GLD+ + VI L F GRTG
Sbjct: 410 ASRGLDIPNVDLVIHYELPNDPETFVH-RSGRTG 442
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQIR----PRVYIHRIG 656
L F++G+ ++LVATDVA+RG I N L+I P ++HR G
Sbjct: 393 LNAFRQGKFTVLVATDVASRG-----LDIPNVDLVIHYELPNDPETFVHRSG 439
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 81.0 bits (191), Expect = 7e-16
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 17/96 (17%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIE-----QIR 169
+G EIVIATPGRLID LE+ +L +C Y+VLDEADRM+DMG EPQ+ +++ ++
Sbjct: 438 QGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLK 497
Query: 170 PD------------RQTLMWSATWPKEVKKLAEDYL 241
P+ R T M+SAT P V++LA YL
Sbjct: 498 PENEEEELDEKKIYRTTYMFSATMPPGVERLARKYL 533
Score = 54.0 bits (124), Expect = 9e-08
Identities = 36/124 (29%), Positives = 64/124 (51%)
Frame = +1
Query: 295 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVC 474
I Q V + +E EK +L LL E+G+ I+FV TK+ ++I++N+ + G+
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKT-----AIVFVNTKKNCDSIAKNLDKAGYRVTT 605
Query: 475 MHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGFTSIVL 654
+HG K+Q++R+ R L + G+D+ + +VI + K + +T +
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRI- 664
Query: 655 GRTG 666
GRTG
Sbjct: 665 GRTG 668
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
++GV IV+ATPGRL D L K L C L LDEADR++D+G E IR + + + RQ
Sbjct: 227 KKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQ 286
Query: 182 TLMWSATWPKEVKKLAEDYL 241
TL++SAT P +++ A L
Sbjct: 287 TLLFSATMPAKIQIFATSAL 306
Score = 43.6 bits (98), Expect = 1e-04
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Frame = +1
Query: 253 SINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAEN 432
++N+G +AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K ++
Sbjct: 311 TVNVGRAG-AANLDVIQEVEYVKQ---EAKIVYLLECLQKTTPP---VLIFCENKADVDD 363
Query: 433 ISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKV-VPVFL*QLMLQLEGLDVDGIQYVIK 609
I + G AV +HG K Q++RD + IS K L + +GLD IQ+VI
Sbjct: 364 IHEYLLLKGVEAVAIHGGKDQEDRD-YAISLFKAGKKDVLVATDVASKGLDFPDIQHVIN 422
Query: 610 X*LSKFVRGFTSIVLGRTG 666
+ + + + GRTG
Sbjct: 423 YDMPGEIENYVHRI-GRTG 440
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
V +++ TPGR++D +KG +L+ C LV+DEAD++L + +P I ++I+ + RQ LM
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILM 332
Query: 191 WSATWPKEVKKLAEDYL-GDYIRSI*DHYNFPQITTFF 301
+SAT+P VK + YL YI ++ D +T ++
Sbjct: 333 FSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYY 370
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
V +++ TPGR++D +KG +L+ C+ LV+DEAD++L +P + +I + RQ LM
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILM 309
Query: 191 WSATWPKEVKKLAEDYL-GDYIRSI*DHYNFPQITTFF 301
+SAT+P VK + +L Y+ ++ D IT F+
Sbjct: 310 FSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFY 347
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
V +++ TPGR++D +KG +L+ C+ LV+DEAD++L +P + +I + RQ LM
Sbjct: 250 VHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILM 309
Query: 191 WSATWPKEVKKLAEDYL-GDYIRSI*DHYNFPQITTFF 301
+SAT+P VK + +L Y+ ++ D IT F+
Sbjct: 310 FSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFY 347
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 74.1 bits (174), Expect = 8e-14
Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
V +++ TPGR++D +KG +L+ C LV+DEAD++L +P + ++I+ + +RQ LM
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLM 302
Query: 191 WSATWPKEVKKLAEDYL-GDYIRSI*DHYNFPQITTFF 301
+SAT+P VK + +L Y+ ++ D +T ++
Sbjct: 303 FSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYY 340
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 74.1 bits (174), Expect = 8e-14
Identities = 33/98 (33%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
V +++ TPGR++D +KG +L+ C LV+DEAD++L +P + ++I+ + +RQ LM
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLM 302
Query: 191 WSATWPKEVKKLAEDYL-GDYIRSI*DHYNFPQITTFF 301
+SAT+P VK + +L Y+ ++ D +T ++
Sbjct: 303 FSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYY 340
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 74.1 bits (174), Expect = 8e-14
Identities = 31/80 (38%), Positives = 53/80 (66%)
Frame = +2
Query: 8 GVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
GV++ + TPGR+ID +++G L ++VLDEAD+ML +G + I+E++ RQ++
Sbjct: 226 GVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSM 285
Query: 188 MWSATWPKEVKKLAEDYLGD 247
M+SAT P ++ L + YL +
Sbjct: 286 MFSATMPSWIRSLTKKYLNN 305
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/94 (29%), Positives = 41/94 (43%)
Frame = +1
Query: 385 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLML 564
G K I+F +TKR A+ +S + R + +HGD +Q +R+ R L +
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407
Query: 565 QLEGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTG 666
GLDV + +I L F GRTG
Sbjct: 408 AARGLDVPNVDLIIHYELPNNTETFVHRT-GRTG 440
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 471 LHAWR*NSTRKR*VLYQFKEGRASILVATDVAARG 575
LH S R+R L F++G +ILVATDVAARG
Sbjct: 378 LHGDISQSQRER-TLAGFRDGHFNILVATDVAARG 411
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/80 (36%), Positives = 53/80 (66%)
Frame = +2
Query: 8 GVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
G+++ + TPGR+ID +++G L ++VLDEAD+ML +G + I++++ RQ++
Sbjct: 238 GIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM 297
Query: 188 MWSATWPKEVKKLAEDYLGD 247
M+SAT P ++ L + YL +
Sbjct: 298 MFSATMPSWIRSLTKKYLNN 317
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/94 (28%), Positives = 41/94 (43%)
Frame = +1
Query: 385 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLML 564
G K I+F +TKR A+ ++ + + + +HGD +Q +R+ R L +
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 565 QLEGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTG 666
GLDV + VI L F GRTG
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRT-GRTG 452
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 471 LHAWR*NSTRKR*VLYQFKEGRASILVATDVAARG 575
LH + R+R L F++G SILVATDVAARG
Sbjct: 390 LHGDISQAQRER-TLAGFRDGNFSILVATDVAARG 423
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYL---VLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
+I+IATPGRL+D +E + + R L ++DEAD +LD+G + + KII+ + RQ+
Sbjct: 506 QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQS 565
Query: 185 LMWSATWPKEVKKLAE 232
L++SAT PKEV+++++
Sbjct: 566 LLFSATIPKEVRRVSQ 581
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 519 QFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRVYIHRIG 656
+FKE ILV +DV+ARG YP + L+IQ+ YIHR+G
Sbjct: 679 EFKESNRLILVTSDVSARGM---NYP--DVTLVIQVGIPSDREQYIHRLG 723
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKG---TTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
+I++ATPGRL D +E T L+ LVLDEAD +LDMG I +II + +RQT
Sbjct: 184 QILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQT 243
Query: 185 LMWSATWPKEVKKL 226
++SAT P+EV+++
Sbjct: 244 FLFSATVPEEVRQI 257
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +3
Query: 471 LHAWR*NSTRKR*VLYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI-RPR---V 638
+H+ + S R R V +F++ + ILV +DV+ARG YP + L++Q+ P+
Sbjct: 342 IHSRKPQSYRTR-VSNEFRKSKGLILVTSDVSARGV---DYP--DVTLVLQVGLPKDREQ 395
Query: 639 YIHRIG 656
YIHR+G
Sbjct: 396 YIHRLG 401
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYL---VLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
+I+IATPGRL+D +E + + R L ++DEAD +LD+G + KII+ + RQ+
Sbjct: 459 QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQS 518
Query: 185 LMWSATWPKEVKKLAE 232
L++SAT PKEV+++++
Sbjct: 519 LLFSATIPKEVRRVSQ 534
Score = 28.7 bits (61), Expect = 3.8
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 471 LHAWR*NSTRKR*VLYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRV 638
+HA + R R V +FKE ILV +DV+ARG YP + L+IQ+
Sbjct: 617 IHARKPQLHRTR-VSDEFKESNRLILVTSDVSARGM---NYP--DVTLVIQVGIPSDREQ 670
Query: 639 YIHRIG 656
YIHR+G
Sbjct: 671 YIHRLG 676
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/85 (37%), Positives = 50/85 (58%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
ERGV V TPGR+ D +++G+ + LVLDE+D ML G + QI + + D Q
Sbjct: 138 ERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQ 197
Query: 182 TLMWSATWPKEVKKLAEDYLGDYIR 256
+ SAT P+E+ ++ E ++ D +R
Sbjct: 198 VCLISATLPQEILEMTEKFMTDPVR 222
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+ IIF T++K + ++ +R + MHGDK Q+ERD+ R L +
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWA 322
Query: 571 EGLDVDGIQYVI 606
G+DV + +VI
Sbjct: 323 RGIDVQTVSHVI 334
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 510 VLYQFKEGRASILVATDVAARGA*C*WYP-ICN*XLIIQIRPRVYIHRIG 656
++ QF+ ++ +L+A+DV ARG + N I P +YIHRIG
Sbjct: 303 IMNQFRSFKSRVLIASDVWARGIDVQTVSHVIN--YDIPNNPELYIHRIG 350
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTT-ILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+GV +++ATPGRL+D LE I + +LV+DEADR+L+ E ++KI+ + RQ
Sbjct: 275 KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQ 334
Query: 182 TLMWSATWPKEVKKLA 229
T ++SAT +V+ LA
Sbjct: 335 TSLFSATQSAKVEDLA 350
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 64.5 bits (150), Expect = 6e-11
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGT---TILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
+I++ATPGRL D +E + T L LVLDEAD +LDMG I +II + RQT
Sbjct: 512 QILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQT 571
Query: 185 LMWSATWPKEVKKL 226
++SAT P+EV+++
Sbjct: 572 FLFSATVPEEVRQI 585
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 471 LHAWR*NSTRKR*VLYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRV 638
+H+ + S R R V +F++ +A ILV +DV+ARG YP + L++Q+
Sbjct: 670 IHSRKPQSYRTR-VSDEFRKSKAIILVTSDVSARGV---DYPDVS--LVVQMGLPSDREQ 723
Query: 639 YIHRIG 656
YIHR+G
Sbjct: 724 YIHRLG 729
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR 178
E G ++I TPGRL D +E+ + + L+LDEADR+L+MG + Q+ II ++ R
Sbjct: 140 EEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQR 199
Query: 179 QTLMWSATWPKEVKKLAEDYLGDYIR 256
+T ++SAT + V++LA+ L + +R
Sbjct: 200 RTGLFSATQTEGVEELAKAGLRNPVR 225
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 475 MHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIK 609
+HGD Q RD+ S K L + GLD+ GI YV++
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQ 352
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
+IV+ATPGR+ID L ++ L L+LDEADR+L G +I +++ RQT++
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349
Query: 191 WSATWPKEVKKLAEDYLGDYIR 256
+SAT +EVK+L + L +R
Sbjct: 350 FSATMTEEVKELVKLSLNKPLR 371
Score = 36.3 bits (80), Expect = 0.019
Identities = 29/92 (31%), Positives = 42/92 (45%)
Frame = +1
Query: 388 AKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQ 567
+K IIF TK+ A + G A +HG+ TQ +R + RK FL +
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 568 LEGLDVDGIQYVIKX*LSKFVRGFTSIVLGRT 663
GLD+ G+Q VI + + + V GRT
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRV-GRT 503
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFL-EKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+G +++IATPGRL+ L E L+ Y+V DEAD + MG Q+ +I+ Q+ +RQ
Sbjct: 147 KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQ 206
Query: 182 TLMWSATWPKEVKKLAE 232
TL++SAT P + + A+
Sbjct: 207 TLLFSATLPSALAEFAK 223
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +1
Query: 334 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG-WPAVCMHGDKTQQERDE 510
E K + LL + + +T+IFV TK E ++ + P+VC +GD Q R
Sbjct: 254 EEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC-YGDMDQDARKI 312
Query: 511 FCISSRKVVPVFL*QLMLQLEGLDVDGIQYVI 606
R + L + G+D+ + VI
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDIPLLDNVI 344
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 519 QFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI--RPRVYIHRIG 656
+F+ + +L+ TD+AARG P+ + + RP++++HR+G
Sbjct: 316 RFRARKTMLLIVTDIAARGIDI---PLLDNVINWDFPPRPKIFVHRVG 360
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 63.3 bits (147), Expect = 1e-10
Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Frame = +2
Query: 17 IVIATPGRLIDFLE--KGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLM 190
+++ATPGRL D + KG + L+ YLVLDEADR+L+ E + +I+E+I +R+T +
Sbjct: 142 VIVATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFL 200
Query: 191 WSATWPKEVKKL 226
+SAT K+V+KL
Sbjct: 201 FSATMTKKVRKL 212
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQIRPRVYIHRIG 656
L +FK G +ILV TDVA+RG + I + YIHR+G
Sbjct: 303 LNKFKAGECNILVCTDVASRGLDIPSVDVVI-NYDIPTNSKDYIHRVG 349
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR- 178
+RGV+IV+ TPGR+ D +E+ + VLDEAD ML MG + I+ ++
Sbjct: 222 KRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTK 281
Query: 179 -QTLMWSATWPKEVKKLAEDYL 241
QTL++SAT P VK ++ +L
Sbjct: 282 VQTLLFSATLPSWVKNISNRFL 303
Score = 32.3 bits (70), Expect = 0.31
Identities = 31/135 (22%), Positives = 59/135 (43%)
Frame = +1
Query: 262 IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISR 441
+G+ ++ A++++ I C + L+ +I G +TIIF ETK + +S
Sbjct: 313 VGNDKMKASNSVRHIAIPCNKAAMAR----LIPDIISCYSSGGQTIIFAETKVQVSELSG 368
Query: 442 NIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LS 621
+ + +HG+ Q +R+ R L + GLD++ +Q +I+
Sbjct: 369 LLD----GSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPP 424
Query: 622 KFVRGFTSIVLGRTG 666
+ V + GRTG
Sbjct: 425 REVEAYIH-RSGRTG 438
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 522 FKEGRASILVATDVAARGA*C*WYPICN*XLIIQIRP----RVYIHRIG 656
F+ G+ + LVAT+VAARG I + LIIQ P YIHR G
Sbjct: 392 FRNGKFATLVATNVAARG-----LDINDVQLIIQCEPPREVEAYIHRSG 435
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
++GVE++I TPGR++D L K T L VLDE D ML G Q+ +I + + Q
Sbjct: 234 QQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQ 292
Query: 182 TLMWSATWPKEVKKL 226
L++SAT +EV+K+
Sbjct: 293 VLLFSATISREVEKV 307
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
++GVE++I TPGR++D L K T L VLDE D ML G Q+ +I + + Q
Sbjct: 97 QQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQ 155
Query: 182 TLMWSATWPKEVKKL 226
L++SAT +EV+K+
Sbjct: 156 VLLFSATISREVEKV 170
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR 178
E G ++I TPGRL D +++ + + L+LDEADR+LDMG + Q+ II ++ R
Sbjct: 140 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 199
Query: 179 QTLMWSATWPKEVKKLAE 232
+T ++SAT + V LA+
Sbjct: 200 RTGLFSATQTQAVADLAK 217
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR 178
E G ++I TPGRL D +++ + + L+LDEADR+LDMG + Q+ II ++ R
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 192
Query: 179 QTLMWSATWPKEVKKLAE 232
+T ++SAT + V LA+
Sbjct: 193 RTGLFSATQTQAVADLAK 210
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
E GV +V TPGR+ D +++ + + L+LDE+D ML G + QI + + PD Q
Sbjct: 151 EHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQ 210
Query: 182 TLMWSATWPKEVKKLAEDYLGDYIR 256
+ SAT P E+ ++ ++ + ++
Sbjct: 211 VCLVSATLPHEILEMTSKFMTEPVK 235
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/94 (30%), Positives = 42/94 (44%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+ +IF TKRK + +S +R + + MHGD Q+ERD R L +
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWA 335
Query: 571 EGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTGTF 672
G+DV + VI L R +GR+G F
Sbjct: 336 RGIDVQQVSLVINYDLPN-NRELYIHRIGRSGRF 368
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 8 GVEIVIATPGRLIDFLEKGTT-ILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
G +VIATPGRL+D L+ I + LV+DEADR+L+ E + KI++ + RQT
Sbjct: 211 GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQT 270
Query: 185 LMWSATWPKEVKKLA 229
++SAT +VK LA
Sbjct: 271 ALFSATQTSKVKDLA 285
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 489 NSTRKR*VLYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRVYIHRIG 656
+ R+ + F + + IL+ TDVAARG I + IIQ +P YIHR+G
Sbjct: 369 DQNRRTKTFFDFMKAKKGILLCTDVAARG-----LDIPSVDWIIQYDPPDKPTEYIHRVG 423
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTI---LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
IVI TPGR+ LE + R +LVLDEADR+LD+G + ++R I + + RQTL
Sbjct: 179 IVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTL 238
Query: 188 MWSATWPKEVKKLAE 232
++SAT ++ L E
Sbjct: 239 LFSATMTSNLQALLE 253
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 513 LYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI--RPRVYIHRIG 656
L +FK G+ IL+ATDVA+RG P + + I PR Y+HR+G
Sbjct: 345 LSKFKSGKVPILLATDVASRGL---DIPTVDLVINYDIPRDPRDYVHRVG 391
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGT---TILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQT 184
+I++ATPGRL D ++ + T L LVLDEAD +LDMG +I +II + RQT
Sbjct: 210 QILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQT 269
Query: 185 LMWSATWPKEVKKL 226
++SAT EV+++
Sbjct: 270 FLFSATVSDEVRQI 283
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 471 LHAWR*NSTRKR*VLYQFKEGRASILVATDVAARGA*C*WYPICN*XLIIQI----RPRV 638
+H+ + S R R V +F++ ++ ILV +DV+ARG YP + L++Q+
Sbjct: 368 IHSRKPQSYRTR-VSDEFRKSKSIILVTSDVSARGV---DYPDVS--LVVQMGLPSDREQ 421
Query: 639 YIHRIG 656
YIHR+G
Sbjct: 422 YIHRLG 427
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/85 (34%), Positives = 46/85 (54%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+ GV +V+ TPGR+ D L++ + VLDEAD ML G + QI I + + P Q
Sbjct: 155 QAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 182 TLMWSATWPKEVKKLAEDYLGDYIR 256
++SAT P E ++ ++ +R
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVR 239
Score = 35.1 bits (77), Expect = 0.043
Identities = 26/94 (27%), Positives = 39/94 (41%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+++IFV T+RK + ++ +R HGD Q RD R L L
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 571 EGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTGTF 672
G+DV + VI L + + GR+G F
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRI-GRSGRF 372
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTI-LQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTL 187
+ I++ PGRL+ +++ + L+LDEADR+LD + Q+ II Q+ RQTL
Sbjct: 194 MNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTL 253
Query: 188 MWSATWPKEVKKLAEDYLGD 247
++SAT K+VK LA L D
Sbjct: 254 LFSATQTKKVKDLARLSLRD 273
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/85 (34%), Positives = 45/85 (52%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+ GV +V+ TPGR+ D L + + VLDEAD ML G + QI I + + P Q
Sbjct: 155 QAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 182 TLMWSATWPKEVKKLAEDYLGDYIR 256
++SAT P E ++ ++ +R
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVR 239
Score = 35.1 bits (77), Expect = 0.043
Identities = 26/94 (27%), Positives = 39/94 (41%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+++IFV T+RK + ++ +R HGD Q RD R L L
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 571 EGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTGTF 672
G+DV + VI L + + GR+G F
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRI-GRSGRF 372
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Frame = +2
Query: 11 VEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRP------ 172
+++V+ TPGR++ +E+G + YLVLDEAD M D G P+IRK + +
Sbjct: 240 IDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTN 299
Query: 173 DR--QTLMWSATWPKEVKKLAED 235
D+ QT++ +AT V+KL ++
Sbjct: 300 DQGFQTVLVTATMTMAVQKLVDE 322
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 334 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 510
E+KL LLQ + S G+K ++F T + + + V HG+ ++R E
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVE 411
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/85 (32%), Positives = 44/85 (51%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
+ GV +V+ TPGR+ D L + + VLDEAD ML G + QI I + + Q
Sbjct: 157 QSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQ 216
Query: 182 TLMWSATWPKEVKKLAEDYLGDYIR 256
++SAT P E ++ ++ +R
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVR 241
Score = 35.1 bits (77), Expect = 0.043
Identities = 26/94 (27%), Positives = 39/94 (41%)
Frame = +1
Query: 391 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQL 570
+++IFV T+RK + ++ +R HGD Q RD R L L
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 571 EGLDVDGIQYVIKX*LSKFVRGFTSIVLGRTGTF 672
G+DV + VI L + + GR+G F
Sbjct: 342 RGIDVQQVSLVINFDLPTQPENYLHRI-GRSGRF 374
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLD-MGXEPQIRKIIEQIRPDRQTLMW 193
IV+ TPGR++ + L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 194 SATWPKEVKKLAEDYLGD 247
SAT KE++ + + ++ D
Sbjct: 229 SATLSKEIRPVCKKFMQD 246
Score = 41.1 bits (92), Expect = 7e-04
Identities = 33/128 (25%), Positives = 59/128 (46%)
Frame = +1
Query: 289 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 468
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 261 HGLVQHYIKLSEMEKNRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 469 VCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGFTSI 648
+C+H +Q+ER S ++ L L G+D++ + VI + +
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 649 VLGRTGTF 672
V GR G F
Sbjct: 376 V-GRAGRF 382
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLD-MGXEPQIRKIIEQIRPDRQTLMW 193
IV+ TPGR++ + L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 145
Query: 194 SATWPKEVKKLAEDYLGD 247
SAT KE++ + + ++ D
Sbjct: 146 SATLSKEIRPVCKKFMQD 163
Score = 40.7 bits (91), Expect = 9e-04
Identities = 33/128 (25%), Positives = 59/128 (46%)
Frame = +1
Query: 289 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 468
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 178 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 232
Query: 469 VCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGFTSI 648
+C+H +Q+ER S ++ L L G+D++ + VI + +
Sbjct: 233 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 292
Query: 649 VLGRTGTF 672
V GR G F
Sbjct: 293 V-GRAGRF 299
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLD-MGXEPQIRKIIEQIRPDRQTLMW 193
IV+ TPGR++ + L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 194 SATWPKEVKKLAEDYLGD 247
SAT KE++ + + ++ D
Sbjct: 229 SATLSKEIRPVCKKFMQD 246
Score = 40.7 bits (91), Expect = 9e-04
Identities = 33/128 (25%), Positives = 59/128 (46%)
Frame = +1
Query: 289 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 468
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 261 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 469 VCMHGDKTQQERDEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVIKX*LSKFVRGFTSI 648
+C+H +Q+ER S ++ L L G+D++ + VI + +
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 649 VLGRTGTF 672
V GR G F
Sbjct: 376 V-GRAGRF 382
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +2
Query: 5 RGVEIVIATPGRLIDFLEKGTTILQR-CTYLVLDEADRMLDMGXEPQIRKIIE 160
+G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G +I +II+
Sbjct: 154 KGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIK 206
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI-RPDRQTLM 190
+++I+TP RL ++ L + YLVLDE+D++ + QI +++ P +
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSL 319
Query: 191 WSATWPKEVKKLAEDYLGDYIRSI*DHYNFPQITTFFKL 307
+SAT P V++LA + D +R I N T KL
Sbjct: 320 FSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKL 358
Score = 30.7 bits (66), Expect = 0.93
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = +1
Query: 331 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 510
+E KL L Q +S P +IFV++K +A+ + ++ A +H D ER+
Sbjct: 364 EEGKLLALRQSFAESLNP--PVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGEREN 421
Query: 511 FCISSRKVVPVFL*QLMLQLEGLDVDGIQYVI 606
R L + G+D GI VI
Sbjct: 422 AVDQFRAGEKWVLIATDVIARGMDFKGINCVI 453
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQI---------- 166
IV+ TPGR+ + + G C +LVLDE D +L I +I+E +
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKG 305
Query: 167 ----RPDRQTLMWSATWPKEVKKLAEDY 238
R +RQT++ SAT P V + A+ +
Sbjct: 306 EVDERANRQTILVSATVPFSVIRAAKSW 333
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/93 (24%), Positives = 49/93 (52%)
Frame = +1
Query: 328 EKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD 507
+++NK+ V+ +I + + G +TIIFV+TK A+ + + + G+ +HG+ T+ +RD
Sbjct: 322 KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRD 380
Query: 508 EFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVI 606
+ ++ + L + G D + V+
Sbjct: 381 KIVKEFKECLTQVLIATDVIARGFDQQRVNLVV 413
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 17 IVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLD----MGXEPQIRKIIEQIRPDRQT 184
+VI TPG L ++ L LV DEAD ML +I K I ++ P+ Q
Sbjct: 217 VVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQV 276
Query: 185 LMWSATWPKEVK 220
L++SAT+ + VK
Sbjct: 277 LLFSATFNETVK 288
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLE--KGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPD 175
E V+I++ATPGRL+D + KG T L+ YLV+DE DR+L + + +++ +
Sbjct: 163 ESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTS 221
Query: 176 RQTLMWSAT 202
+L S T
Sbjct: 222 DDSLFPSFT 230
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +2
Query: 14 EIVIATPGRLIDFL---EKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIE 160
EIV+ATPGRL + + EK L ++ VLDEADRM++ G +++ I++
Sbjct: 331 EIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRML-DMGXEPQIRKIIEQIRPDR 178
E+GV+++IATPGR + +G L +LDE D + D E ++ +I
Sbjct: 500 EQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTA 559
Query: 179 QTLMWSATWPKEV-KKLAE 232
Q L +AT P E+ KL E
Sbjct: 560 QYLFVTATLPLEIYNKLVE 578
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Frame = +1
Query: 334 ENKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRR--YGWPAVCMHGDKTQQ 498
+NK LLQ + + P +KTIIF +ET RK ENI + + R + H +Q+
Sbjct: 620 QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQE 677
Query: 499 ER----DEFCISSRKVVPVFL*QLMLQLEGLDVDGIQYVI 606
R EF S + +FL G+D G+ +V+
Sbjct: 678 SRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVV 717
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKG----TTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQ 181
EI+++TP + G T + + + LVLDEAD +L G E +R + I Q
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQ 233
Query: 182 TLMWSATWPKEVKKL 226
L+ SAT +V+KL
Sbjct: 234 CLLMSATTSSDVEKL 248
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/83 (20%), Positives = 40/83 (48%)
Frame = +2
Query: 14 EIVIATPGRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDRQTLMW 193
E ++ATP RL++ + + + LV+DE + G ++ I + I QT+++
Sbjct: 248 EFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVF 307
Query: 194 SATWPKEVKKLAEDYLGDYIRSI 262
+ ++ + + +LG + +
Sbjct: 308 NNSFSASIIPAVQSFLGGSVNRV 330
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Frame = +2
Query: 2 ERGVEIVIATPGRLIDFLE-KGTTILQ--RCT-YLVLDEADRMLDMGXEPQIRKIIEQIR 169
+R +I+++TP L++ +E K L+ RC Y+V DEAD +L + QI ++I +R
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLR 266
Query: 170 PDRQ 181
D +
Sbjct: 267 FDEK 270
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +1
Query: 307 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 486
VD+ + + +K+ LL+E+ + G+K+I+F + + + + R + V + G
Sbjct: 853 VDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGT 912
Query: 487 KTQQERDE 510
+QQ+R++
Sbjct: 913 LSQQQREK 920
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 35 GRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQI 145
GR++DF+ T + + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 62 GTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR 178
G +L++ LVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 62 GTTILQRCTYLVLDEADRMLDMGXEPQIRKIIEQIRPDR 178
G +L++ LVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 35 GRLIDFLEKGTTILQRCTYLVLDEADRMLDMGXEPQI 145
GR++DF+ T + + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 146 RKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 247
++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 159 KRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,771
Number of Sequences: 28952
Number of extensions: 286173
Number of successful extensions: 949
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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