Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0254
         (804 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    25   0.71 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   6.6  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 495 KFHAIKPKPTSRPGPRSSQQRQSVMTKL-ETDLDSKPSSTPVAVKRP 632
           K   I P+P   P P+ +Q  +S  T+  E   +S  +  P   K P
Sbjct: 387 KSDEIPPEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTP 433


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 193 PADIFAWKLFQHSENCSSDAMIATTRRGT 107
           PA I ++ L QH   CSS   + +T   T
Sbjct: 221 PASIDSFTLEQHRSWCSSSQPVLSTTNST 249


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 RSSQQRQSVMTKLETDLDSKPSSTPVAVKRPN 635
           R + Q   ++TK ++    K +  PVAV R N
Sbjct: 27  RKNPQDDILLTKKKSKPGGKTAPQPVAVARRN 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,141
Number of Sequences: 336
Number of extensions: 3630
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)