Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0254
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.1  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    27   4.1  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   4.1  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    26   5.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.5  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    26   7.2  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 457 LQVKGLTGNQNEESSTPSNQSRLRGQAPGRH 549
           ++VKG    QNE  S P NQ  + G AP  H
Sbjct: 242 MEVKGRVCTQNEYKSDPKNQYNILG-APKPH 271


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 483 SK*RKFHAIKPKPTSRPGPRSSQQRQSVMTKLETDLDSKPSS 608
           SK R+F A K     RPG  S++ R+    +     + KPS+
Sbjct: 254 SKRRRFDAFKEMDRQRPGKYSNRGRKFKKQRSSNASEEKPSA 295


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 528 RPGPRSSQQRQSVMTKLETDLDSKPSSTPVAVKRPNRASI 647
           RP PR+S+ +Q +   + TD+     S PV   R  R+S+
Sbjct: 20  RPEPRTSKDQQKL--SISTDVKKPSHSAPVTPVRSARSSM 57


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 528 RPGPRSSQQRQSVMTKLETDLDSKPSSTPVAVKRPNRASIASK*LFFPHKVDQ 686
           R   + ++  QSV++    D  S   S P+A+ +    S  +K + FP K ++
Sbjct: 159 RSSEKLNRNLQSVLSSEAVDSSSGSPSPPMALSQAEIRSRQTKRVMFPDKAEE 211


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 510 KPKPTSRPGPRSSQQRQSVMTKLETDLDSKPSSTPVAVKRPNRASIASK*LFFPHK 677
           K  P   P P S   + S+         S+PS T V+      A ++S  + FPHK
Sbjct: 295 KVTPAPAPAPESEPSKPSIAP-------SQPSKTNVSAAYEKPAELSSSSVPFPHK 343


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 655 NNSSFLTKWTSETKMRRFHXEAGPSGFCQKTEFVTVPDEDXEXLLS 792
           +NSSF  +     + R    +A  SG   + EF+++P      L S
Sbjct: 14  SNSSFSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLAS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,263
Number of Sequences: 5004
Number of extensions: 62053
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)