Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0253
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    28   1.8  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.8  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.3  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.2  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 322 PARGETPL-LHHHKHHQTPVRS 384
           PA  ET + LHH KHHQT V +
Sbjct: 40  PALSETIMKLHHDKHHQTYVNN 61


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 50  NIESSCRLRLVERPPRNLVKPRKIIRKRQNTVLYRKSKIL 169
           N+E +  ++L + P  NLV+  ++    +N+VL  KS  L
Sbjct: 468 NLEPTSNIQLKKNPDGNLVETSELSDSDENSVLSNKSSTL 507


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 267 FSPTRESQRLSSNSCARHSGKRRDTASSPPQTPSNTSKKQRVDDE 401
           F   R+S +  S S   H      T+S+P Q+P  +  K   +DE
Sbjct: 63  FEIDRDSLKSDSGSPRLHQNATAPTSSTPLQSPDESVNKLNSEDE 107


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 258 LKQFSPTRESQRLSSNSCARHSGKRRDTASSPPQTP 365
           L+++  TR +QRL     A  S +   T+  PP  P
Sbjct: 152 LRRYYSTRTAQRLDVRRPASRSSRYSKTSDLPPSDP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,152
Number of Sequences: 5004
Number of extensions: 59758
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)