Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0253
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1230 - 9936226-9936706,9938145-9938200,9939145-9939233,994...    30   1.9  
03_05_0301 + 22928864-22929787                                         30   2.5  
01_01_0046 - 331758-332627                                             29   4.3  
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119...    29   5.7  
01_05_0421 + 21990034-21990392,21991691-21992681                       25   6.6  
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036           28   7.5  
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059...    28   7.5  

>01_01_1230 -
           9936226-9936706,9938145-9938200,9939145-9939233,
           9940820-9940923,9943756-9943931,9945130-9945713,
           9947441-9947513
          Length = 520

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 5   YVCVPWGFLNSNLNTNIESSCRLRLVERPP---RNLVKPRKIIRKRQNTVLYRKSKILMV 175
           +  V W   N +    +ES CRL+ + +PP   RN  K   +  + +N V+    K   +
Sbjct: 247 FAVVTWS--NWDCRVMLESECRLKRIRKPPYFNRNKKKESNLSERSKNHVIALDQKFYRM 304

Query: 176 NW 181
           N+
Sbjct: 305 NF 306


>03_05_0301 + 22928864-22929787
          Length = 307

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 PLLHHHKHHQTPVRSRELMTNDLGRDQ 420
           P  HHH HHQ  V ++ +   ++ RDQ
Sbjct: 177 PHPHHHHHHQQMVNAQHMALVEVARDQ 203


>01_01_0046 - 331758-332627
          Length = 289

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 334 ETPLLHHHKHHQTPVRSRELMTNDLGRD 417
           + P  HHH+H Q  V+ +E    DL +D
Sbjct: 104 QPPPTHHHQHQQHKVKDQEEKKGDLRKD 131


>01_06_1446 -
           37409074-37409783,37409896-37409986,37410645-37411988,
           37412062-37412709,37412801-37412852,37413141-37413214,
           37414370-37414419,37414488-37414569,37414779-37414828,
           37414907-37414949,37415030-37415110,37415198-37415243,
           37415336-37415382,37415467-37415532,37415612-37415678,
           37415761-37415858
          Length = 1182

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 80  VERPPRNLVKPRKIIRKRQNTVLYRKSKILMVNWRRNCTKVMLYPPAGEE 229
           V++ PRN +K  KII+K   T L  +SK+   N     ++V L  P+  E
Sbjct: 374 VDQRPRNEIKQPKIIKKIL-TTLREESKLRQNNSPIRASRVKLNSPSNRE 422


>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 25.0 bits (52), Expect(2) = 6.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 301 AIAVLDIPARGETPLLHHHKHH 366
           A A+  IPA    P  HHH HH
Sbjct: 139 AKAIGGIPAAMAAPGHHHHHHH 160



 Score = 21.8 bits (44), Expect(2) = 6.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 349 HHHKHHQ 369
           HHH HHQ
Sbjct: 158 HHHHHHQ 164


>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
          Length = 420

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 270 SPTRESQRLSSNSCARHSGKRRDTASSPPQTPSNTSKKQ 386
           +PTR  ++ S N+    S   +DT+    Q  S TSK++
Sbjct: 215 TPTRAEEKSSKNTTTAESRHPKDTSLEEKQVKSATSKEE 253


>02_05_0740 -
           31404004-31404180,31404365-31405261,31405351-31405978,
           31405997-31406468,31406575-31407052
          Length = 883

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 327 KRRDTASSPPQTPSNTSKKQRVDDE 401
           KR+ TASSPP  PS+    + +D++
Sbjct: 300 KRKKTASSPPPEPSSKRVDEELDED 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,845
Number of Sequences: 37544
Number of extensions: 360112
Number of successful extensions: 1077
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)