Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0253
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)           30   2.5  
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               24   4.6  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           29   5.8  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)                  29   5.8  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
          Length = 483

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 295 CPAIAVLDIP-ARGETP---LLHHHKHHQTPVR 381
           CP +  L IP AR   P   ++HHH HH  PVR
Sbjct: 186 CPPVINLLIPTARPCMPPPIIIHHHHHHPFPVR 218


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 24.2 bits (50), Expect(2) = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 298 PAIAVLDIPARGETPLLHHHKHHQ 369
           P+I ++ I     T +LH+H HH+
Sbjct: 34  PSIIIIIITISTITLVLHYHHHHR 57



 Score = 23.4 bits (48), Expect(2) = 4.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 346 LHHHKHHQTP 375
           LHHH HH  P
Sbjct: 98  LHHHYHHHPP 107


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 89  PPRNLVKPRKIIRKRQNTVLYRKSKILMVNWRRNCTKVMLY 211
           PPRN   PR + R R+    YRK   + V   RN T  +LY
Sbjct: 2   PPRNHFSPRTLRRARRGEKAYRK---VCVQRGRNITVPVLY 39


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 276  TRESQRLSSNSCARHSGKRRDTASSPPQTPSNTSK 380
            TR   R SSN+   H+G+  +T  S  +  SNT++
Sbjct: 1098 TRSHTRRSSNTTRSHTGRSSNTTRSHTRRSSNTTR 1132


>SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)
          Length = 732

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 294 ISAIPLSEKTVLAFNIIEYNLSSSPAGGYNITFVQFRLQFTIS 166
           + A+P + K+ +A  +  Y L +    GY + FV  R Q T++
Sbjct: 36  LKALPGAGKSAVAIQLAHYILKTQQYHGYQVVFVCLREQKTLA 78


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 270 SPTRESQRLSSNSCARHSGKRRDTASSPPQTPSNTSKKQRV 392
           SP     R    S +R+  +RR  + SP  T S   K+QRV
Sbjct: 350 SPRSSLGRSRRRSSSRNRRRRRSRSKSPLNTKSQCEKEQRV 390


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,121,461
Number of Sequences: 59808
Number of extensions: 433181
Number of successful extensions: 1313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)