Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0253
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epiderm...    48   1e-05
U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epiderm...    48   1e-05
AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like ...    48   1e-05
U61955-5|AAM97994.1|   42|Caenorhabditis elegans Zygotic epiderm...    31   0.73 
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    25   5.7  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    25   5.7  
Z73105-3|CAA97441.2|  205|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain p...    28   8.9  
AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform a protein.
          Length = 775

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 130 TSKYCLISQEQDTDGELETKLYKGDVVPTCGGGAQVIFNDVE 255
           + +Y L  QE D +G + T + KG+V+PT  GG  V FND+E
Sbjct: 723 SGEYRLTHQEVDDEGNISTNIVKGNVIPTVSGGTAVFFNDIE 764


>U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform c protein.
          Length = 777

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 130 TSKYCLISQEQDTDGELETKLYKGDVVPTCGGGAQVIFNDVE 255
           + +Y L  QE D +G + T + KG+V+PT  GG  V FND+E
Sbjct: 725 SGEYRLTHQEVDDEGNISTNIVKGNVIPTVSGGTAVFFNDIE 766


>AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like
           protein ZEN-4a protein.
          Length = 775

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 130 TSKYCLISQEQDTDGELETKLYKGDVVPTCGGGAQVIFNDVE 255
           + +Y L  QE D +G + T + KG+V+PT  GG  V FND+E
Sbjct: 723 SGEYRLTHQEVDDEGNISTNIVKGNVIPTVSGGTAVFFNDIE 764


>U61955-5|AAM97994.1|   42|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform d protein.
          Length = 42

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 190 LYKGDVVPTCGGGAQVIFNDVE 255
           ++ G+V+PT  GG  V FND+E
Sbjct: 10  VFVGNVIPTVSGGTAVFFNDIE 31


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 276 TRESQRLSSNSCARHSGKRRDTASSPP-QTPSNTSKKQRVDD 398
           TR  +  S NS  R+   RRD+ +SPP + PS+ +++++ DD
Sbjct: 183 TRRDRHDSDNSPPRNRS-RRDSDNSPPRRRPSSPARRRKDDD 223


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 24.6 bits (51), Expect(2) = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 PARGETPLLHHHKHH 366
           P +  TP  HHH HH
Sbjct: 304 PLKETTPRRHHHGHH 318



 Score = 22.2 bits (45), Expect(2) = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 349 HHHKHHQTPVRSRELMTNDLGRDQ 420
           HHH H+ + VR     T +   D+
Sbjct: 323 HHHHHYSSTVRPTTTTTRESELDR 346


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 24.6 bits (51), Expect(2) = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 PARGETPLLHHHKHH 366
           P +  TP  HHH HH
Sbjct: 304 PLKETTPRRHHHGHH 318



 Score = 22.2 bits (45), Expect(2) = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 349 HHHKHHQTPVRSRELMTNDLGRDQ 420
           HHH H+ + VR     T +   D+
Sbjct: 323 HHHHHYSSTVRPTTTTTRESELDR 346


>Z73105-3|CAA97441.2|  205|Caenorhabditis elegans Hypothetical
           protein R13.2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 282 ESQRLSSNSCARHSGKRRDTASSPPQTPSNTSKKQR 389
           ESQ+  S+S    SG +  + +S  Q PS   +K R
Sbjct: 43  ESQQSDSSSSVDESGSKTSSPTSMQQNPSQDGRKNR 78


>AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical
           protein Y75B8A.1 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 270 SPTRESQRLSSNSCARHSGKRRDTASSPPQTPSNTS 377
           S +  S  LS      HS +  DTASSP   P  TS
Sbjct: 80  SSSSASNNLSRTQADNHSERGSDTASSPQVAPLPTS 115


>AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain
           protein PHP-3 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 270 SPTRESQRLSSNSCARHSGKRRDTASSPPQTPSNTS 377
           S +  S  LS      HS +  DTASSP   P  TS
Sbjct: 80  SSSSASNNLSRTQADNHSERGSDTASSPQVAPLPTS 115


>AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical
           protein T21G5.6 protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 349 HHHKHHQTPVRSRELMTNDLGRDQVK*NKWKNINMFLW 462
           HHHKHH      R  +T++  R + + NK   +    W
Sbjct: 50  HHHKHHIRHKHRRRSLTSEEDRTKTQRNKQVMLTKPYW 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,691
Number of Sequences: 27780
Number of extensions: 338220
Number of successful extensions: 1094
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)