Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0253
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.82 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.6  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 20/90 (22%), Positives = 36/90 (40%)
 Frame = -1

Query: 750 RRYFKYIGSKLTLRMSWXKKKIH*ICHWPTFKSVENRKHKKDNLKVTSSRFY*NYNHDNN 571
           RRY K    K  L      +K +        KS +N    +   + +  R       + +
Sbjct: 250 RRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERS 309

Query: 570 QECR*FNFFTYSMILNENSYQPQFNNYIKK 481
           +E +  +  + +   N N+Y+  +NNY KK
Sbjct: 310 KERKIISSLSNNYNYNNNNYKYNYNNYNKK 339


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 20/90 (22%), Positives = 35/90 (38%)
 Frame = -1

Query: 750 RRYFKYIGSKLTLRMSWXKKKIH*ICHWPTFKSVENRKHKKDNLKVTSSRFY*NYNHDNN 571
           RRY K    K  L      +K +        KS +N    +   + +  R       + +
Sbjct: 17  RRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERS 76

Query: 570 QECR*FNFFTYSMILNENSYQPQFNNYIKK 481
           +E +  +  +   I N N+Y+  +NN  KK
Sbjct: 77  REPKIISSLSNKTIHNNNNYKYNYNNNCKK 106


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 349 HHHKHHQT 372
           HHH HHQT
Sbjct: 351 HHHHHHQT 358


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/63 (20%), Positives = 27/63 (42%)
 Frame = -1

Query: 654 SVENRKHKKDNLKVTSSRFY*NYNHDNNQECR*FNFFTYSMILNENSYQPQFNNYIKKSN 475
           S +N K  +   + +  R       + ++E +  +  +   I N N+Y+  +NN    +N
Sbjct: 49  SYKNEKEYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNN 108

Query: 474 KFY 466
             Y
Sbjct: 109 NNY 111


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 552 NFFTYSMILNENSYQPQFNNYIKK 481
           N + YS   N N+Y   +NNY KK
Sbjct: 87  NNYNYS---NYNNYNNNYNNYNKK 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 19/94 (20%), Positives = 36/94 (38%)
 Frame = -1

Query: 750 RRYFKYIGSKLTLRMSWXKKKIH*ICHWPTFKSVENRKHKKDNLKVTSSRFY*NYNHDNN 571
           RRY K    K  L      +K +        KS +N    +   + +  R       + +
Sbjct: 250 RRYEKLHNEKEKLLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERS 309

Query: 570 QECR*FNFFTYSMILNENSYQPQFNNYIKKSNKF 469
           +E +  +  +   I N N+Y+  +NN    +N +
Sbjct: 310 REPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNY 343


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 270 KTVLAFNIIEYN 235
           KT+ ++N+IEYN
Sbjct: 19  KTIYSWNVIEYN 30


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 552 NFFTYSMILNENSYQPQFNNYIKKSNKF 469
           N + YS   N N+Y   +NNY   +N +
Sbjct: 320 NNYKYS---NYNNYNNNYNNYNNYNNNY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,533
Number of Sequences: 438
Number of extensions: 4696
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)