Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0251
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   2.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   2.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.4  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   8.4  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    25   8.4  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   8.4  

>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 306 SDPRAPARVSSICPPASPPTRTDASSLSTKI 398
           SDP AP+   S+ P +S  T  D S    K+
Sbjct: 89  SDPTAPSSAQSVPPTSSAETTADNSDTEMKL 119


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 487 WILELPAFLPKRTEF*YEVTRRREDLNSVVIFVDND 380
           W+ E+   +P    F Y+  R+   L S  IF+D D
Sbjct: 345 WLSEIDLHVPSLKVFHYQGIRKSNGLKSAKIFLDCD 380


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +3

Query: 36  SISSSMALEPNVSRGIGQAIPGYWMSVTVRPTRSPVPGVPMFSFGREGQDEGQVS 200
           S S   A E   S G G        S  +      VP    FSF ++G+DE   S
Sbjct: 643 SESKPSAPESKPSSGFGNTAGSSPFSFNLTKESKEVPPTNSFSFAKKGKDEANDS 697


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 225  KEGNIIVADREITEYRYSIAVANLR*CSDPRAPARVSSICPPASPPTRTDASSLSTKITT 404
            KE  +++  +EITEYR  +  A        + P +  +I    S P  +D +  ST  TT
Sbjct: 1065 KEAELVIFQKEITEYRDQLHKAF-------QNPEKTHNINDVKSGPLNSDENIYSTSSTT 1117


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 369 TDASSLSTKITTEFRSSRRLVTSY*NSVRLGRNAG 473
           T +SS      T    S RL+ S+ NSVR+ R+ G
Sbjct: 728 TRSSSYVVSSETSSLKSSRLILSHANSVRIQRSKG 762


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 309 DPRAPARVSSICPPASPPTRTDASSLSTKI 398
           D ++  + SSI  P++PP  T++ + ST+I
Sbjct: 616 DSQSEYKESSILAPSNPPFETESITDSTEI 645


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 371 GRIIVIDKDNHRVQIF-TSSGNFILKFGSFGKECGQFQY 484
           G + V   +N  ++ F TSSGN + KFG         Q+
Sbjct: 345 GNLFVAGLENGELRFFETSSGNELTKFGPHSSPVKTLQF 383


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 502 EQLGNIVVTDTRNHRIQLFTSDGTYITKFV 591
           + LG IVV DTR   ++L   D + + K+V
Sbjct: 74  QPLGTIVVEDTRPPHLRLDFDDLSQVDKYV 103


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 241 IMLPSLSTQRPQGRETWPSS 182
           I+LP LS   P   E WPSS
Sbjct: 154 IILPYLSIPAPMCTECWPSS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,600
Number of Sequences: 5004
Number of extensions: 52706
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)